Protein Alignment scro and hoxd3a

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_571200.1
• Gene: hoxd3a / 30349
• ZFINID: ZDB-GENE-990415-120
• Length: 396
• Species: Danio rerio
• Alignment Length: 385
• Identity: 95/385 - (24%)
• Similarity: 146/385 - (37%)
• Gaps: 73/385 - (18%)

  Fly   100 HSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMAN 164
            |....|:...:::.:|.......|..:.:::..::||:...|    |:|...:.|.:::....|.
Zfish    30 HQGFSSSSIENDYQSPICPIQTTSVRQATHKNGDINGSCMRP----SASQGNSQPESISEQQQAA 90

  Fly   165 PYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISR----LMSSSASGT 225
            |.|..    ||...|            :.|..:.|.|..||:...|  .||:    .|..:....
Zfish    91 PLAAS----SPSPST------------NSTQKKKSPSSNGSSTATP--VISKQIFPWMKETRQNA 137

  Fly   226 MSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLI 290
            .....|..  ||....|.|....|.::|  .|..:|.||:.|||:.|...|||..|.|..:|:|:
Zfish   138 KQKSTNCP--AAGETCDDKSPPGPASKR--VRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 198

  Fly   291 HLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSSQS- 354
            :||..|:||||||.|.|.|:..|.|.:......:.|..||             |.||:|....|
Zfish   199 NLTERQIKIWFQNRRMKYKKDQKSKGIMHSPLGHSPDRSP-------------PLSGSNHIGYSG 250

  Fly   355 QQHGTNSTS--AGNNTGSANNGNANSGIVSVTANVSGGL---NLITGDAPNSHSPD-----TSSS 409
            |....||.|  |.:....|.......|:.:.||.:.|.:   ....|...:.||..     .:::
Zfish   251 QLPNVNSLSYDAPSPPSFAKPQQNIYGLAAYTAPLGGCIPQQKRYPGTEYDHHSMQGNGSFANAN 315

  Fly   410 LLASYGTVGGS------------NVAMLQQPCNNTLMSNSLAMAYRNQNNFISNGHQQQC 457
            |.:|...|||:            |:..|..|       :|.::.|........|.|...|
Zfish   316 LQSSPVYVGGNFVDSMPASGPMFNLGHLPHP-------SSASVDYSCAAQIPGNHHHGPC 368

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	26/55 (47%)
hoxd3a	NP_571200.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	18..163		31/156 (20%)
		COG5576	116..237	CDD:227863	41/126 (33%)
		Antp-type hexapeptide	126..131		0/4 (0%)
		Homeodomain	162..218	CDD:459649	27/57 (47%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	219..246		9/39 (23%)
		DUF4074	333..394	CDD:463833	8/43 (19%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	364..396		2/5 (40%)