Protein Alignment scro and Hoxb13

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001100511.1
• Gene: Hoxb13 / 303480
• RGDID: 1309113
• Length: 286
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 57/280 - (20%)
• Similarity: 95/280 - (33%)
• Gaps: 88/280 - (31%)

  Fly   112 HSTPFS---VTDILSPIEESYRKLELNGN--PPS-----------------PFR----------- 143
            ||:|.:   ....|.| ..:|..|:|.|:  ||.                 |:.
  Rat    30 HSSPLASHPAAPTLMP-TVNYAPLDLPGSAEPPKQCHPCPGVPQGASPAPVPYGYFGGGYYSCRV 93

  Fly   144 SNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTAN 208
            |.||........||.|.....|        :||.:....||:.....|:....:..||:
  Rat    94 SRSSLKPCAQTATLATYPSETP--------APGEEYPSRPTEFAFYPGYPGPYQPMASY------ 144

  Fly   209 DPRFAISRLMSSSASGTMSH--------------MGNMSGLAACSVSDSKPLQF-------PLAQ 252
               ..:|.:.:..|.|...|              .|..:....|....:.|..|       |..|
  Rat   145 ---LDVSVVQTLGAPGEPRHDSLLPVDSYQPWALAGGWNSQMCCQGEQNPPGPFWKAAFAEPSVQ 206

  Fly   253 R-----------RKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRY 306
            .           ||:|:.:::.|:.||||.:...::::..:|..:::...|:..|:.|||||.|.
  Rat   207 HPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRV 271

  Fly   307 KCKRQAKEKAMAEQNQHNQP 326
            |     ::|.:|:......|
  Rat   272 K-----EKKVLAKVKTSTTP 286

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	18/55 (33%)
Hoxb13	NP_001100511.1	HoxA13_N	12..124	CDD:463521	21/102 (21%)
		Homeodomain	219..275	CDD:459649	18/60 (30%)