Protein Alignment scro and hoxc4a

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_571197.1
• Gene: hoxc4a / 30345
• ZFINID: ZDB-GENE-990415-112
• Length: 268
• Species: Danio rerio
• Alignment Length: 315
• Identity: 72/315 - (22%)
• Similarity: 111/315 - (35%)
• Gaps: 108/315 - (34%)

  Fly    95 HLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTT 159
            |....:|:.:.:.:..:|..       |.|...||::.:.|            .:||..|.|
Zfish    32 HSPEYYSRARDSGYQHHHQE-------LYPPRASYQERQYN------------CASIPEPDT--- 74

  Fly   160 STMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSAS- 223
                              |...|    |..|||......|||     ...|...:|....|:||
Zfish    75 ------------------QRGHG----LPHAGHLLGKGQSAS-----CEPPPLPLSPATPSAASS 112

  Fly   224 ----GTMSHMGNMSGLAACSVSDSKPLQFPL---------------AQRRKRRVLFTQAQVYELE 269
                .|..|..:       |.|..:|:.:|.               |:.::.|..:|:.||.|||
Zfish   113 ACNQATPEHPNS-------SASAKQPVVYPWMKKIHVSTVNSSYNGAEPKRSRTAYTRQQVLELE 170

  Fly   270 RRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVA 334
            :.|...|||:...|..:|..:.|:..|:||||||.|.|.|:           .|..|.:..|
Zfish   171 KEFHYNRYLTRRRRIEIAHSLVLSERQIKIWFQNRRMKWKK-----------DHRLPNTKVR--- 221

  Fly   335 VPVLVKDGKPCSGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSGIVSVTANVSG 389
                          :|||.....|:|::||.....:|:..|.    :|.:.::||
Zfish   222 --------------SSSSTGISSGSNTSSAAGVVAAASTTNT----MSASEDLSG 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	23/55 (42%)
hoxc4a	NP_571197.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	70..129		20/95 (21%)
		Antp-type hexapeptide	133..138		1/4 (25%)
		Homeodomain	155..211	CDD:459649	23/55 (42%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	212..268		15/68 (22%)