DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and hoxa2b

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_571181.1 Gene:hoxa2b / 30325 ZFINID:ZDB-GENE-990415-98 Length:363 Species:Danio rerio


Alignment Length:388 Identity:92/388 - (23%)
Similarity:135/388 - (34%) Gaps:131/388 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 NLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTM 162
            |...:.::...||..|....:|. ..|:.::::                 ||||.| .||:.||:
Zfish     2 NYEFERETGFINSQPSLAECLTS-FPPVGDAFQ-----------------SSSIKS-STLSHSTL 47

  Fly   163 ANPYAMGTL---------YHSPGVQTYCG--PTDNLSLAGHYTDMRNSASWYGSTANDPRFAISR 216
            ..|....|:         .||...|...|  |....||...|..|:.            :.|..:
Zfish    48 IPPPFEQTIPSLNPGSHPRHSRPKQNPNGSCPLPAASLPPEYPWMKE------------KKASKK 100

  Fly   217 LMSSSASGTMSHMGNMSGLAACSVSDSKPLQFP-----------LAQRRKRRVLFTQAQVYELER 270
            ..::|.:.|               :|..||.|.           ....|:.|..:|..|:.|||:
Zfish   101 NQTTSTAAT---------------TDPGPLYFSPQGSPEISDGGSGATRRLRTAYTNTQLLELEK 150

  Fly   271 RFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAV 335
            .|...:||..|.|..:|:|:.||..|||:||||.|.|.|||.:    .::|.|.           
Zfish   151 EFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ----CKENHHG----------- 200

  Fly   336 PVLVKDGKPCSGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSGIVSVTANVSGGL--------- 391
                 ||||.|...:..:                    |:..|....|..||||.|         
Zfish   201 -----DGKPPSLEEAGGR--------------------GDGKSFFEQVANNVSGALLEREGYPFQ 240

  Fly   392 -NLITG-DAPNSHSPDTSSSLLASYGTVGGSNVAMLQQ--------PCNNTLMSNSLAMAYRN 444
             |.:|. .:.|.|:.|:.|:.::..    |||...|:.        |...|.|:...|.|..|
Zfish   241 QNTLTSQQSQNGHNSDSQSATVSPL----GSNDKHLKHFPNPSPTVPICTTTMAPDCASAQDN 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 25/55 (45%)
hoxa2bNP_571181.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..132 21/116 (18%)
Antp-type hexapeptide 88..93 1/4 (25%)
Homeodomain 134..190 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..218 12/71 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 245..279 9/37 (24%)

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