Protein Alignment scro and Hoxc12

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001100266.1
• Gene: Hoxc12 / 300262
• RGDID: 1310539
• Length: 280
• Species: Rattus norvegicus
• Alignment Length: 229
• Identity: 64/229 - (27%)
• Similarity: 93/229 - (40%)
• Gaps: 53/229 - (23%)

  Fly   115 PFSVTDILSPIEES---YR-----------KLELNGNPPSPFRSNSSSSSINSPG-TLTTSTMAN 164
            ||..|..|:.:|:|   ||           |.|..|..|..           .|| .|.....:.
  Rat    78 PFGRTCELARVEDSKGYYREPCAEGGGGGLKREERGREPGA-----------GPGAALLQLEPSG 131

  Fly   165 PYAMGTLYHSP----GVQTYCGPT-DNLSLAGHYTDMRNS---ASWYGSTANDPRFAISRLMSSS 221
            |.|:|..|..|    |.....||. |..|.....:|..:|   ....|::|.||...:|.|
  Rat   132 PPALGFKYDYPAGGGGGDGNTGPPHDPPSCQSLESDSSSSLLNEGNKGASAGDPGSLVSPL---- 192

  Fly   222 ASGTMSHMGNMSGLAACSVSDSKPLQFPLAQR-RKRRVLFTQAQVYELERRFKQQRYLSAPEREH 285
                     |..|    .:|.|....:|:..| ||:|..:::.|:.|||..|....:::...|..
  Rat   193 ---------NPGG----GLSASGAPWYPIHSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRE 244

  Fly   286 LASLIHLTPTQVKIWFQNHRYKCKR-QAKEKAMA 318
            |:..::|:..||||||||.|.|.|| ..:|:|::
  Rat   245 LSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALS 278

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	21/55 (38%)
Hoxc12	NP_001100266.1	Homeodomain	213..269	CDD:459649	21/55 (38%)