Protein Alignment scro and Hmx3

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001099772.1
• Gene: Hmx3 / 293537
• RGDID: 1559927
• Length: 356
• Species: Rattus norvegicus
• Alignment Length: 314
• Identity: 82/314 - (26%)
• Similarity: 120/314 - (38%)
• Gaps: 104/314 - (33%)

  Fly   114 TPFSVTDILSPIEESYRKLELNGN----PPSP-------FRSNSSSSSINSPGTLTTSTMANPYA 167
            :|||:.::            |||:    ||.|       |...|::::        .:..|...|
  Rat    29 SPFSIRNL------------LNGDHHRPPPKPQPPPRTLFAPASAAAA--------AAAAAAAAA 73

  Fly   168 MGTLYHSPG-VQTYCG---------PTDNLSLAGHYTDMRNSASWY-------GSTANDPRFAIS 215
            .|.|..:.| ..:..|         |....:|..||.: |:.|.||       |.....|..:..
  Rat    74 KGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLE-RSPAWWYPYTLTPAGGHLPRPEASEK 137

  Fly   216 RLM--SSSASGT-------------------------------MSHMGNMSGLAACSVSDS---- 243
            .|:  ||.||||                               .|..|...|.|....:.:
  Rat   138 ALLRDSSPASGTDRDSPDPLLKADPDHKELDSKSPDEIILEESDSEEGKKEGEAVPGAAGTTVGA 202

  Fly   244 ---------------KPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLT 293
                           .|.:.|..:::|.|.:|:::||::||..|..:||||:.||..||:.:|||
  Rat   203 TAATPGSEDWKAGADSPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLT 267

  Fly   294 PTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSG 347
            .|||||||||.|.|.|||...:..|....|   |::.|.|.||:|..:.....|
  Rat   268 ETQVKIWFQNRRNKWKRQLAAELEAANLSH---AAAQRIVRVPILYHENSAAEG 318

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	30/55 (55%)
Hmx3	NP_001099772.1	Homeodomain	228..284	CDD:459649	30/55 (55%)