Protein Alignment scro and Hoxd1

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 222
• Identity: 59/222 - (26%)
• Similarity: 81/222 - (36%)
• Gaps: 63/222 - (28%)

  Fly   139 PSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYC----GPTDNLSLAGHYTDMRNS 199
            |.||           |..|......:|....|:..:||.   |    .||..|. |.|.|
  Rat   160 PGPF-----------PACLKEPADGHPGPFQTVSPAPGA---CPKPASPTSGLP-AAHST----- 204

  Fly   200 ASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQ 264
            ..|.....|.|:           ...:|..|..|..:|.                  |..|:..|
  Rat   205 FEWMKVKRNAPK-----------KSKLSEYGATSPSSAI------------------RTNFSTKQ 240

  Fly   265 VYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASS 329
            :.|||:.|...:||:...|..:|:.:.|..|||||||||.|.|.|::.:|..:|       .|:|
  Rat   241 LTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLA-------TAAS 298

  Fly   330 PRRVAVPVLVKDGKPC-SGNNSSSQSQ 355
            ...:.:|  ..:..|. ||.|..|.||
  Rat   299 VASLQLP--GSETSPIKSGRNLGSPSQ 323

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	23/55 (42%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	42/154 (27%)
		Homeodomain	233..286	CDD:459649	23/52 (44%)