DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and Nkx2-1

DIOPT Version :9

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_006240178.1 Gene:Nkx2-1 / 25628 RGDID:3866 Length:423 Species:Rattus norvegicus


Alignment Length:425 Identity:168/425 - (39%)
Similarity:211/425 - (49%) Gaps:89/425 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 IHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGN----PPSPFRSNSSS----- 148
            :|..::..|:.:....:..|:|||||:|||||:||||:|:.:.|.    |.:.:|...::     
  Rat    39 VHPTRSALSRRRIMSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPAAA 103

  Fly   149 ---SSINSPGTLTTSTMANPYAMGTLYHSPGVQTYC-GPTDNLSLAGHYTD-MRNSAS---WYGS 205
               .::...|.:|.:.......:..|.|| .|..|| |...|:|....|.| ||||||   |||:
  Rat   104 MQQHAVGHHGAVTAAYHMTAAGVPQLSHS-AVGGYCNGNLGNVSELPPYQDTMRNSASGPGWYGA 167

  Fly   206 TANDPRF-AISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELE 269
            .. |||| ||||.|..::...||.||.:..|...| .:..||  |.|.||||||||:||||||||
  Rat   168 NP-DPRFPAISRFMGPASGMNMSGMGGLGSLGDVS-KNMAPL--PSAPRRKRRVLFSQAQVYELE 228

  Fly   270 RRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQ-------------- 320
            ||||||:||||||||||||:||||||||||||||||||.|||||:||..:|              
  Rat   229 RRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGG 293

  Fly   321 ----NQHNQPASSPRRVAVPVLVKDGKPCSG-----------NNSSSQSQQHGTNSTSAGNNTGS 370
                .|......|||||||||||||||||..           .::..|:||             .
  Rat   294 AGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQQ-------------Q 345

  Fly   371 ANNGNANSGIVSVTANVSGGLNLITGDAPNS--HSPDTSSSLLASYGTVGGSNVAMLQQPCNNTL 433
            |....|.:..:||.:. ..||....|..|.|  .|||     ||.:    .::.|.||...::..
  Rat   346 AQAAQAAAAAISVGSG-GAGLGAHPGHQPGSAGQSPD-----LAHH----AASPAALQGQVSSLS 400

  Fly   434 MSNSLAMAYRNQNNFISNGHQQQCGGYLPLQGRAW 468
            ..||....|          ....|...  |.||.|
  Rat   401 HLNSSGSDY----------GAMSCSTL--LYGRTW 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeobox 256..309 CDD:278475 49/52 (94%)
Nkx2-1XP_006240178.1 Homeobox 215..268 CDD:278475 49/52 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166336902
Domainoid 1 1.000 114 1.000 Domainoid score I5913
eggNOG 1 0.900 - - E2759_KOG0842
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 218 1.000 Inparanoid score I3494
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002967
OrthoInspector 1 1.000 - - otm45980
orthoMCL 1 0.900 - - OOG6_108513
Panther 1 1.100 - - O PTHR24340
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X524
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.750

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