Protein Alignment scro and Msx2

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_037114.2
• Gene: Msx2 / 25483
• RGDID: 3116
• Length: 267
• Species: Rattus norvegicus
• Alignment Length: 204
• Identity: 60/204 - (29%)
• Similarity: 86/204 - (42%)
• Gaps: 54/204 - (26%)

  Fly   113 STPFSVTDILS---PIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHS 174
            |.||||..::|   |.:||          |:.....:|:.::..|..|....:.:.       ||
  Rat    44 SLPFSVEALMSDKKPPKES----------PAVPPDCASAGAVLRPLLLPGHGVRDA-------HS 91

  Fly   175 PGVQTYCGPTDNLSLAGHYTDMRNSASWY---GSTANDPRFAISRLMSSSASGTMSHMGNMSGLA 236
            ||  ....|.:..|:....::  :.|.|.   |..:..||.     ||.:......|..|
  Rat    92 PG--PLVKPFETASVKSENSE--DGAPWIQEPGRYSPPPRH-----MSPTTCTLRKHKTN----- 142

  Fly   237 ACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWF 301
                             ||.|..||.:|:..|||:|:|::|||..||...:|.::||.|||||||
  Rat   143 -----------------RKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWF 190

  Fly   302 QNHRYKCKR 310
            ||.|.|.||
  Rat   191 QNRRAKAKR 199

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	30/55 (55%)
Msx2	NP_037114.2	Homeodomain	143..199	CDD:459649	30/55 (55%)