Protein Alignment scro and Gbx1

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001258382.1
• Gene: Gbx1 / 246149
• RGDID: 621864
• Length: 425
• Species: Rattus norvegicus
• Alignment Length: 291
• Identity: 77/291 - (26%)
• Similarity: 109/291 - (37%)
• Gaps: 65/291 - (22%)

  Fly    75 VSTAAAAAVAHHHHNLSSIHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPP 139
            ::.|||||.|                    ||:..||...|...||.....:|.....|....||
  Rat   180 LAAAAAAAAA--------------------STVSRSNPEPPARRTDGALDADELLPAREKVTEPP 224

  Fly   140 SPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSL---AGHYTDMRNSAS 201
            .|         ...|....:.|..:..|.|.:|.|          |...|   ||..........
  Rat   225 PP---------PPPPPPHFSETFPSLPAEGKVYSS----------DEEKLEPPAGEPAGSEPEEE 270

  Fly   202 WYGSTANDPRFAISRLMSSSASGTMSHMG---NMSGLAACSVSDSKP----LQFPLAQRRKRRVL 259
            ..|..:.|      ..:.|||.|..:.:|   .:.|.......:..|    :..|..:.|:||..
  Rat   271 GSGGDSED------SFLDSSAGGPGALLGPKPKLKGSLGTGAEEGTPVATGVTTPGGKSRRRRTA 329

  Fly   260 FTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHN 324
            ||..|:.|||:.|..::|||..||..:|..:.|:..||||||||.|.|.||   .||....::..
  Rat   330 FTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR---IKAGNVSSRSG 391

  Fly   325 QPASSPRRVAVPVLVKDGKPCSGNNSSSQSQ 355
            :|..:| ::.||:      |...|..:.:||
  Rat   392 EPVRNP-KIVVPI------PVHVNRFAVRSQ 415

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	27/55 (49%)
Gbx1	NP_001258382.1	Homeodomain	324..380	CDD:459649	27/55 (49%)