DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and Bsx

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_839976.1 Gene:Bsx / 244813 MGIID:2669849 Length:232 Species:Mus musculus


Alignment Length:377 Identity:68/377 - (18%)
Similarity:129/377 - (34%) Gaps:117/377 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELD 67
            |:|......|:::|.:..|.:..:: :.:.:|:::.|           ||||..|.|.:      
Mouse   749 ALKHGPETELSAVLEQAEDWTMRLR-YLSEEPQNSPP-----------DIIIWMLQGDR------ 795

  Fly    68 QVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKC- 131
            :|..|     ||...:::|.  ..:.|                        |....|.:..:|| 
Mouse   796 RVAYH-----RIPAHQVLFS--YGYCG------------------------KHCGQLQTVFMKCP 829

  Fly   132 ---GELEKMKERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVK-------- 184
               |...|:..:|.....|| ..|..::|....|         .|.:|.|..:.:.|        
Mouse   830 QEDGGCSKIPAQLRIKVWFGLTADVKSFNQFAEG---------KLSVFAETYENQTKLALVGNWG 885

  Fly   185 PTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTV------HIYASLIKAL---CQIGELS 240
            .||:|:.       |.|.|...:|:..:..|     |:.      ..:.|..|.:   ...|.:|
Mouse   886 TTGLTYP-------KFSDVTGRVKLPKESFK-----PSSGWSWAGEWFISPEKTMLYDADAGHIS 938

  Fly   241 FAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCV 305
            |.    :|.:|.::::....:..:.......  :.|.::..:|:.   |.|..|..::       
Mouse   939 FL----EEVFENQLRLPGGQWIGMPEGYTDV--NGEKAVPKDEIE---CPPGWVWEDI------- 987

  Fly   306 ENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRR 357
             ..||...|.:|   ::|.:     |.:.|....|.|.|..:..::....||
Mouse   988 -EWSEDLKRAVD---DQGWE-----YGITLPPDRRPKSWVPSEKMYHTNRRR 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 5/55 (9%)
BsxNP_839976.1 Homeodomain 111..167 CDD:459649
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..232
Blue background indicates that the domain is not in the aligned region.

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