DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scro and Nkx1-2

DIOPT Version :9

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_033149.1 Gene:Nkx1-2 / 20231 MGIID:104806 Length:305 Species:Mus musculus


Alignment Length:278 Identity:75/278 - (26%)
Similarity:101/278 - (36%) Gaps:59/278 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 SNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPY-------A 167
            |:|...|||.|||.|  :.:.:..|   ||....:..:..|:........:...||.       |
Mouse    14 SHHKISFSVLDILDP--QKFTRAAL---PPVRLAALEAKKSLEEVEAGQDACSGNPIGSQETPDA 73

  Fly   168 MGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNM 232
            :|... .||........:....|...........|.|.....|. |.:..:.:..||.       
Mouse    74 VGRGI-DPGSPVEGSEAEEEEEAEDAGRAHQPERWQGVHEGSPE-ARAVAVGTEESGA------- 129

  Fly   233 SGLAACSVSDSKP------LQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIH 291
            .||.|...|...|      .:...|:.|:.|..||..|:..||.:|:..||||..||.:||..:.
Mouse   130 EGLPASPGSPGSPRPRRRRAESSCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLS 194

  Fly   292 LTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSSQSQQ 356
            ||.|||||||||.|.|.|:|             .|.:            ||...:|..    :.|
Mouse   195 LTETQVKIWFQNRRTKWKKQ-------------NPGA------------DGAVQAGGG----APQ 230

  Fly   357 HGTNSTSAGNN---TGSA 371
            .||....||..   |||:
Mouse   231 PGTPGAVAGGGGSATGSS 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeobox 256..309 CDD:278475 28/52 (54%)
Nkx1-2NP_033149.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..158 19/115 (17%)
Homeobox 160..212 CDD:278475 28/51 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..257 15/68 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833341
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.