DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and R03G8.1

DIOPT Version :9

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_510172.2 Gene:R03G8.1 / 187544 WormBaseID:WBGene00010996 Length:663 Species:Caenorhabditis elegans


Alignment Length:121 Identity:31/121 - (25%)
Similarity:40/121 - (33%) Gaps:40/121 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 TAISQHHQVDTSTK----LNTNETSTQ---NTVSTAAAAAVAHHHHNLSSIHHLQNLHSQHQSTL 107
            ||||..:.:.|:|.    ||.|....|   :|.:|.............|:|..||....:.||.|
 Worm   441 TAISVPNSLRTNTDILKILNMNSEKLQTHFDTRATILDILKFQPAEKFSAITPLQIPGEKGQSHL 505

  Fly   108 -----FNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPF-----RSNSSSSSINS 153
                 ||.|..|                       .|.||     :.|.:|..|||
 Worm   506 RNQPPFNRNCQT-----------------------MPIPFEYCICQFNKTSVPINS 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeobox 256..309 CDD:278475
R03G8.1NP_510172.2 DUF229 74..651 CDD:281053 31/121 (26%)
ALP_like 175..483 CDD:293745 12/41 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0842
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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