DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and K03A11.4

DIOPT Version :9

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_510170.2 Gene:K03A11.4 / 186918 WormBaseID:WBGene00010521 Length:664 Species:Caenorhabditis elegans


Alignment Length:202 Identity:37/202 - (18%)
Similarity:67/202 - (33%) Gaps:54/202 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 TAISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLHSQHQ---------- 104
            ||:|....:..:||:  .|..|:|      |..:..|:...::|..:....|.:.          
 Worm   446 TALSIPKVLRKTTKI--LEIMTEN------AKQIQSHYDTRATILDIMKYQSANSFSETMPREIP 502

  Fly   105 ----STLFNSNHSTPFSVTDILSPIEE---SYRKLELNGNPPSP---------------FRSNSS 147
                |:......|||.:..::..|::.   .::|.:|..|..:.               ..:|.:
 Worm   503 GEKGSSYIRKQPSTPRNCRNMPVPLQYCICQFKKSKLPRNTTTAESIGKALATAVNTQIAEANFT 567

  Fly   148 SSSINSPGTLTTSTMA--NPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNS---------AS 201
            ...|......|||.:|  :.:...|||   .|........|....|:...|...         ::
 Worm   568 KMCIKMEWEKTTSLLAYDDKFKGATLY---SVTAVMKEPSNAEFKGNVKIMNGEIKVLGMVERSN 629

  Fly   202 WYGSTAN 208
            .||.||:
 Worm   630 KYGKTAD 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeobox 256..309 CDD:278475
K03A11.4NP_510170.2 DUF229 98..570 CDD:281053 21/131 (16%)
ALP_like 199..488 CDD:293745 11/49 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0842
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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