DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and Msx2

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_038629.2 Gene:Msx2 / 17702 MGIID:97169 Length:267 Species:Mus musculus


Alignment Length:204 Identity:60/204 - (29%)
Similarity:86/204 - (42%) Gaps:54/204 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 STPFSVTDILS---PIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHS 174
            |.||||..::|   |.:||          |:.....:|:.::..|..|....:.:.       ||
Mouse    44 SLPFSVEALMSDKKPPKES----------PAVPPDCASAGAVLRPLLLPGHGVRDA-------HS 91

  Fly   175 PGVQTYCGPTDNLSLAGHYTDMRNSASWY---GSTANDPRFAISRLMSSSASGTMSHMGNMSGLA 236
            ||  ....|.:..|:....::  :.|.|.   |..:..||.     ||.:......|..|     
Mouse    92 PG--PLVKPFETASVKSENSE--DGAPWIQEPGRYSPPPRH-----MSPTTCTLRKHKTN----- 142

  Fly   237 ACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWF 301
                             ||.|..||.:|:..|||:|:|::|||..||...:|.::||.|||||||
Mouse   143 -----------------RKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWF 190

  Fly   302 QNHRYKCKR 310
            ||.|.|.||
Mouse   191 QNRRAKAKR 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 30/55 (55%)
Msx2NP_038629.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..42
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..132 7/34 (21%)
Homeodomain 143..199 CDD:459649 30/55 (55%)
Blue background indicates that the domain is not in the aligned region.

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