Protein Alignment scro and pal-1

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001021209.1
• Gene: pal-1 / 175638
• WormBaseID: WBGene00003912
• Length: 270
• Species: Caenorhabditis elegans
• Alignment Length: 296
• Identity: 70/296 - (23%)
• Similarity: 111/296 - (37%)
• Gaps: 69/296 - (23%)

  Fly    58 VDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSI--HHLQ-------------NLHSQHQSTL 107
            ||..:..:.||:|:..:.:|..|.....|:..:..:  |.|:             ...||...|.
 Worm     3 VDVKSDFSENESSSTPSPTTVPADVTWPHYPMMPFMQPHPLREKMLQPTFDPQIYGRWSQMGDTG 67

  Fly   108 FNSNHST-PFSVTDILSPIEESYRKLELNGNPPS-------PFRSNSSSSSIN----SPGTLTTS 160
            |..:... ||.:.           :|..||..|:       |..||.||||.:    ||     |
 Worm    68 FYGHPDLYPFGLP-----------QLAANGQIPAVEAVDVKPPLSNGSSSSDSGMYPSP-----S 116

  Fly   161 TMANPYAMGTLYHSPGVQTYCGPTDNLS----LAGHYTDMRNSASWYGSTANDPRFAISRLMSSS 221
            .|..|:        |...:....:..||    .|.:| .||.:..:..|.     :.........
 Worm   117 DMMTPF--------PSTSSGAASSSELSAAAAAAANY-QMRAATCYQQSV-----WPFMDYQQFQ 167

  Fly   222 ASGTMSHMGNMSGLAACSVSDSKPL-------QFPLAQRRKRRVLFTQAQVYELERRFKQQRYLS 279
            .......:||..|....|.||.|.|       ...:....|.|::::..|..|||:.|....:::
 Worm   168 GFSWKMPLGNNHGKDRRSSSDGKTLPTGPGTNNVRVRTADKYRMVYSDYQRLELEKEFHTSPFIT 232

  Fly   280 APEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEK 315
            :..:..|::::.||..|:||||||.|.|.:|. |:|
 Worm   233 SDRKSQLSTMLSLTERQIKIWFQNRRAKDRRD-KQK 267

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	19/55 (35%)
pal-1	NP_001021209.1	Homeodomain	208..263	CDD:459649	19/54 (35%)