DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and Hoxd3

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:425 Identity:102/425 - (24%)
Similarity:150/425 - (35%) Gaps:142/425 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 NLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSS-------SINS-- 153
            :|.|.:.|:..:...|.|     :.:|   :::..||||:...|...||...       .:||  
Mouse    58 SLDSDYPSSACSIQSSAP-----LRAP---AHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQ 114

  Fly   154 ---------PGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTAND 209
                     |.||..|:..|| ..|.    |..:|..|                           
Mouse   115 QPPQPPPPPPPTLPPSSPTNP-GSGV----PAKKTKGG--------------------------- 147

  Fly   210 PRFAISRLMSSSASGTMSHM---------GNMSGLAACSVS-----DSKPLQFPLAQRRKRRVLF 260
                   |.:||:|.|:|..         .|.....:|:.|     |..|   |....::.|..:
Mouse   148 -------LSASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSP---PGPASKRVRTAY 202

  Fly   261 TQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQ 325
            |.||:.|||:.|...|||..|.|..:|:|::||..|:||||||.|.|.|:..|.|.:.    |:.
Mouse   203 TSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGIL----HSP 263

  Fly   326 PASSPRR----------VA-------VPVLVKDGKPCSGNNSSSQSQQHGTNSTSAGNNT----- 368
            ...||.|          ||       ||.|..|. |.....:.||...:|..:.:|..::     
Mouse   264 AGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDA-PSPPAFAKSQPNMYGLAAYTAPLSSCLPQQ 327

  Fly   369 -----------GSANNGNANSGIVSVTANVSGGLNLITGDAPNSHSPDTSSSLLASYGTVGGSNV 422
                       ..|:||   .|..|  ||:.|....:.|:..:|.:| ||..:.         |:
Mouse   328 KRYPAPEFEPHPMASNG---GGFAS--ANLQGSPVYVGGNFVDSMAP-TSGPVF---------NL 377

  Fly   423 AMLQQPCNNTLMSNSLAMAYRNQNNFISNGHQQQC 457
            ..|..|       :|.::.|........|.|...|
Mouse   378 GHLSHP-------SSASVDYSCAAQIPGNHHHGPC 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 26/55 (47%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 37/189 (20%)
Antp-type hexapeptide 161..166 0/4 (0%)
Homeodomain 196..252 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 4/25 (16%)
DUF4074 370..431 CDD:463833 10/52 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433 2/5 (40%)

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