DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and cad

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_061512454.1 Gene:cad / 1279024 VectorBaseID:AGAMI1_005797 Length:415 Species:Anopheles gambiae


Alignment Length:401 Identity:82/401 - (20%)
Similarity:126/401 - (31%) Gaps:166/401 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 HHHHNLSSIHHLQ-------------NLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNG 136
            ||||:    ||..             |.|..    |.:..||.|                     
Mosquito   124 HHHHH----HHGNNGGGNGGGGGSGGNAHDH----LADGLHSIP--------------------- 159

  Fly   137 NPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSAS 201
            :||    ...|.|.::|||..|.|:            ||            .:....|.:::...
Mosquito   160 SPP----ITVSGSDMSSPGAPTGSS------------SP------------QITPRPTPVKSPYE 196

  Fly   202 WYGSTANDPRFAISRLMSSSASGTMSHMGNMSGL-AACSVSDSKPLQF--PLAQRRKRRVLFTQA 263
            |               |...:..:..:.|.:..: :|.|:.|..|::.  ....:.|.||::|..
Mosquito   197 W---------------MKKQSYQSQPNPGGLINICSAPSLQDFAPVESGGKTRTKDKYRVVYTDQ 246

  Fly   264 QVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPAS 328
            |..|||:.|...||::...:..||..:.|:..||||||||.|.|.::| |:||            
Mosquito   247 QRLELEKEFHYTRYITIRRKAELAQNLQLSERQVKIWFQNRRAKDRKQ-KKKA------------ 298

  Fly   329 SPRRVAVPVLVKDGKPCSGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSGIVSVTANVSGGLNL 393
                                                  .|||...|....|         ||.:|
Mosquito   299 --------------------------------------ETGSVGGGMGGLG---------GGQSL 316

  Fly   394 ITGDAPNSHSPDTSSSLLASYGTVGGSNVAMLQQPCNNTLMSNSLAMAYRNQNNFISNG------ 452
            :...| ..|:|         :|....|..|:|..  ....:..||.:::.:|.:.:|.|      
Mosquito   317 VAAHA-QGHNP---------HGGAAQSMSALLAD--TKPKLEPSLHLSHLHQMSAMSMGMGSMGL 369

  Fly   453 HQQQCGGYLPL 463
            |....|.:..|
Mosquito   370 HHHHPGHHAAL 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 24/55 (44%)
cadXP_061512454.1 None

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