DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and LOC11175540

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_061502148.1 Gene:LOC11175540 / 11175540 VectorBaseID:AGAMI1_015109 Length:475 Species:Anopheles gambiae


Alignment Length:344 Identity:77/344 - (22%)
Similarity:113/344 - (32%) Gaps:111/344 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 AHHHHNLSSIHHLQNL----------HSQHQSTLFN-----SNHSTP------------------ 115
            |.|..:|.|. :::.|          ||:.:.||..     |:.|||                  
Mosquito    60 AGHPKSLPSF-YIERLLGFGPAERPRHSRDKRTLSTGTPPASHCSTPPSGGAVSIASERDWCGAS 123

  Fly   116 FSVTDILSPI---------EESYRKLELNGNPPSPFRSNSSSSSINS------------------ 153
            .|:...||||         :::...||     |.|..|:.||...|.                  
Mosquito   124 ASLAATLSPIGSPLPEEEEDDAEESLE-----PKPLNSSLSSIVYNQAAAPRHHQSMQPGRKLVN 183

  Fly   154 ------PGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTAND-PR 211
                  |...|.....|.:....:....|    .|..|...|||:       ..|:...... |:
Mosquito   184 AVYIAWPEGRTVEVNLNRFQRKMMLSGGG----GGSGDGADLAGY-------GQWHPDLGTGVPQ 237

  Fly   212 FAISRLMSSSASGTMSHMGNMSGL---AACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFK 273
            |...|.....:..:....|:...|   |:..|...:...    :.||.|..::..|:..||..|:
Mosquito   238 FLPERPAHKPSLASKLDFGSDPYLHLQASTLVKRYRKQN----RERKPRQAYSAMQLERLEDEFQ 298

  Fly   274 QQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASS--------- 329
            :..||:..:|..||..:.||.||:|.||||.|.|.|:|...:...||.|..|..:.         
Mosquito   299 RNIYLNVNKRFELAQCLGLTETQIKTWFQNRRTKFKKQQDSRNKREQRQQAQLIAQWLFQPPQLG 363

  Fly   330 -----------PRRVAVPV 337
                       ||..|:||
Mosquito   364 SIPLDGQLQPLPRLAALPV 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 23/55 (42%)
LOC11175540XP_061502148.1 None

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