DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and LBX1

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_006553.2 Gene:LBX1 / 10660 HGNCID:16960 Length:281 Species:Homo sapiens


Alignment Length:245 Identity:76/245 - (31%)
Similarity:100/245 - (40%) Gaps:58/245 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 NSNHS-TPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLY 172
            |||.. ||||:.|||              |.||..||.|..      |.......|:.:|.|   
Human    28 NSNKPLTPFSIEDIL--------------NKPSVRRSYSLC------GAAHLLAAADKHAQG--- 69

  Fly   173 HSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAA 237
                         .|.|||.....:.|          |..|:..|.|.:..|.     .:|.|.|
Human    70 -------------GLPLAGRALLSQTS----------PLCALEELASKTFKGL-----EVSVLQA 106

  Fly   238 CSVSDSKPL----QFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVK 298
            ....|...:    |.| .:|||.|..||..|:||||:||..|:|||..:|:.:|..:.||..||.
Human   107 AEGRDGMTIFGQRQTP-KKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVI 170

  Fly   299 IWFQNHRYKCKRQAKE-KAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSG 347
            .||||.|.|.||..:| ||..|..:...|:.....||:..|.::.:..:|
Human   171 TWFQNRRAKLKRDLEEMKADVESAKKLGPSGQMDIVALAELEQNSEATAG 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 28/55 (51%)
LBX1NP_006553.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35 3/6 (50%)
Homeodomain 126..182 CDD:459649 28/55 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..281 1/7 (14%)

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