Protein Alignment scro and hoxc10a

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: XP_017208987.1
• Gene: hoxc10a / 100535576
• ZFINID: ZDB-GENE-990415-110
• Length: 337
• Species: Danio rerio
• Alignment Length: 324
• Identity: 75/324 - (23%)
• Similarity: 116/324 - (35%)
• Gaps: 96/324 - (29%)

  Fly    41 LSPKDTL----IHTAISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLHS 101
            ||.:|.|    :|....||     |..|:..:|....:.:...:..||...|..|  ....|:..
Zfish    58 LSKRDDLQPSGMHLGSYQH-----SHYLSQRDTWIAGSKTYRGSQPVAQPLHPCS--FPASNVKE 115

  Fly   102 QHQSTLFNSNHSTPFSVTDILSPIEESYRK---LELNGNPPSPFRSNSSSSSINSPGTLTTSTMA 163
            :....|:..:          :...:||..|   :.|..|     .|:.:.|::::|.....|
Zfish   116 EAIPCLYQPD----------IDSAKESGEKSTYIRLGDN-----NSHPNQSAVSTPDYFRRS--- 162

  Fly   164 NPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTAND-PRFA--ISRLMSSS---A 222
                          |.|.      |..||:.|.      :||..|. ||.:  :..|.|.|   :
Zfish   163 --------------QVYA------SERGHHGDE------FGSDFNPIPRISTPVEALASDSCVKS 201

  Fly   223 SGTMSHM----GN----------------MSGLAACS------VSDSKPLQ------FPLAQRRK 255
            |....|.    ||                :|...:|:      :.|...|:      ......||
Zfish   202 SKARQHPEDKGGNTQEDDMDQRQTRKEESVSKTESCTDDSESELKDESKLEKATGNWLKAKSGRK 266

  Fly   256 RRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAE 319
            :|..:|:.|..|||:.|....||:...|..::..|:||..||||||||.|.|.|:..:|..:.|
Zfish   267 KRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKKLNRESRVRE 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	25/55 (45%)
hoxc10a	XP_017208987.1	Homeodomain	265..321	CDD:459649	25/55 (45%)