DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and dbx2

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_002932867.1 Gene:dbx2 / 100489622 XenbaseID:XB-GENE-481734 Length:251 Species:Xenopus tropicalis


Alignment Length:240 Identity:57/240 - (23%)
Similarity:89/240 - (37%) Gaps:80/240 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 NHSTPFSVTDILSPIEE--------SYRKLELNGNPPSPFRSNSSSSSINSPGT-----LTTSTM 162
            |....|.:.|:|..::.        :|..:.:.   ..|.:...||.....|.|     |.||..
 Frog    33 NLGRSFLIDDLLKDVDPLAMKCLPVAYSHVPVT---QCPTKEQFSSLGSTYPRTWTFQLLRTSDR 94

  Fly   163 ANPY----AMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSAS 223
            ..|:    ..|.:|.: ....||              ...||.:|               |:...
 Frog    95 RQPFYPHPFTGDVYET-AFSKYC--------------YLQSAPFY---------------SACCG 129

  Fly   224 GTMSHMGNMSGLAACSVSDSKPLQFPL-----------AQRRKRRVL-----FTQAQVYELERRF 272
            |:..|             .:.|..||.           |..:.|||:     |::.|...||:.|
 Frog   130 GSCQH-------------PASPTAFPRNEMLPPLCGQDASSKTRRVILRRAVFSEEQRKSLEKMF 181

  Fly   273 KQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAM 317
            ::|:|:|..:|::||..:.|..:||||||||.|.|. |.:|||::
 Frog   182 QKQKYISKVDRKNLAVNLALKESQVKIWFQNRRMKW-RNSKEKSV 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649 25/60 (42%)
dbx2XP_002932867.1 Homeodomain 165..219 CDD:459649 22/54 (41%)

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