Protein Alignment scro and hoxc12

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: XP_002936693.1
• Gene: hoxc12 / 100487557
• XenbaseID: XB-GENE-853677
• Length: 263
• Species: Xenopus tropicalis
• Alignment Length: 272
• Identity: 75/272 - (27%)
• Similarity: 113/272 - (41%)
• Gaps: 55/272 - (20%)

  Fly    88 HNLSS---IHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLE------------LNGN 137
            |||.:   :..|.|:|:  ..|.:..|..||......|..:  ||.:.|            .||.
 Frog     4 HNLLNPGFVGPLVNIHT--GDTFYFPNFRTPGGQLPGLPSL--SYPRRENVCSLPWASTEPCNGY 64

  Fly   138 PPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGVQTYCGP------TDNLSL---AGHY 193
             |.|:.  ||..||| |.......:|. ......|:..|    |.|      .:|:.|   :|.:
 Frog    65 -PQPYL--SSPVSIN-PSFSRACDLAR-VEETKCYYREG----CNPDTPSLKRENVLLPLESGIH 120

  Fly   194 TDMRNSASWYGSTA-----NDPRFAISRLMSSSASGTMSH-MGNMSGLAACSVSDSKPLQ----- 247
            :.|.::...|..||     :||. :...|.|.|.|..::. ..|....||...|.|.|..
 Frog   121 SAMNSTFQKYDYTAVDSVPHDPP-SCQSLESDSGSSLLNEGTKNAVSEAATMASPSNPGNSLPAS 184

  Fly   248 ----FPLAQR-RKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYK 307
                :|:..| ||:|..:::.|:.|||..|....:::...|..|:..:.|:..||||||||.|.|
 Frog   185 GAPWYPIHTRSRKKRKPYSKIQLAELEGEFMVNEFITRQRRRELSDRLSLSDQQVKIWFQNRRMK 249

  Fly   308 CKR-QAKEKAMA 318
            .|| ..:|:|::
 Frog   250 KKRLLMREQALS 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	21/55 (38%)
hoxc12	XP_002936693.1	Homeodomain	196..252	CDD:459649	21/55 (38%)