Protein Alignment scro and hoxc13

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: XP_002936691.1
• Gene: hoxc13 / 100487255
• XenbaseID: XB-GENE-478832
• Length: 306
• Species: Xenopus tropicalis
• Alignment Length: 320
• Identity: 73/320 - (22%)
• Similarity: 119/320 - (37%)
• Gaps: 82/320 - (25%)

  Fly    28 FVTAPNEED-----LVMSLSP-------KDTLIHTAISQH------HQVDTSTKLNTNETSTQNT 74
            :.|:|||::     .:..||.       :|.:.|.|:.:|      ||....|.:.:.|.:.|.|
 Frog    19 YETSPNEKNPRKSPAMEGLSGNCASSHCRDFISHPALGRHSSAIGSHQGPVYTDITSPEAARQCT 83

  Fly    75 VSTAAAAAVAHHHHNLSSIHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPP 139
            ...:::.|...:.:...|.::...|...|...|    |..|.           ||...|....|.
 Frog    84 APPSSSNASLGYAYPFGSSYYGCRLSQSHNVNL----HQKPC-----------SYHPAEKYPEPS 133

  Fly   140 SPFRSNSSSSSINS--------------PGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDN--LS 188
            :|..|...||....              ||.|..|.:            ||:.::..|..:  ||
 Frog   134 NPLPSEEFSSRAKEFAFYPSFASSYQAVPGYLDMSVV------------PGISSHPEPRHDTLLS 186

  Fly   189 LAGHYTDMRNSASWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPLA-- 251
            :.| |........|.|..              ..|...|..|:   |......|..|||..::
 Frog   187 MEG-YQHWALPNGWDGQV--------------YCSKDQSQSGH---LWKAPFPDVVPLQPEVSNY 233

  Fly   252 -QRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKR 310
             :.||:||.:|:.|:.|||:.:...::::..:|..:::...|:..||.|||||.|.|.|:
 Frog   234 RRGRKKRVPYTKIQLKELEKEYAASKFITKEKRRRISTATSLSERQVTIWFQNRRVKEKK 293

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	20/55 (36%)
hoxc13	XP_002936691.1	HoxA13_N	31..144	CDD:463521	26/127 (20%)
		Homeodomain	237..293	CDD:459649	20/55 (36%)