Protein Alignment scro and Hoxb2

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001386664.1
• Gene: Hoxb2 / 100361765
• RGDID: 2319509
• Length: 355
• Species: Rattus norvegicus
• Alignment Length: 253
• Identity: 67/253 - (26%)
• Similarity: 97/253 - (38%)
• Gaps: 47/253 - (18%)

  Fly    98 NLHSQHQSTLFNSNHSTPFSVTDILSPIE----ESYRKLELNGNPPSPFRSNSSS-----SSINS 153
            |...:.:....||..|....:|...:.:|    .|.::..|...||.|......|     |::..
  Rat     2 NFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPPLEQTFPSLQLGASTLQR 66

  Fly   154 PGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLM 218
            ||:      ..|...|.....|.......|.....    :...:.||.....:|..|..|.|
  Rat    67 PGS------QKPAGDGPALRPPPPLPVAPPAPEFP----WMKEKKSAKKPSQSAATPSPAAS--- 118

  Fly   219 SSSASGTMSHMGNMS---GLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSA 280
            |..|||    :|:.|   ||.....|.|          |:.|..:|..|:.|||:.|...:||..
  Rat   119 SVRASG----VGSPSDGPGLPESGGSGS----------RRLRTAYTNTQLLELEKEFHFNKYLCR 169

  Fly   281 PEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEK--------AMAEQNQHNQPASSP 330
            |.|..:|:|:.||..|||:||||.|.|.|||.:.:        .::.|:...:||..|
  Rat   170 PRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPGGLSAQDDAGEPAEEP 227

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	25/55 (45%)
Hoxb2	NP_001386664.1	Homeodomain	143..199	CDD:459649	25/55 (45%)