DRSC/TRiP Functional Genomics Resources

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Protein Alignment scro and hoxb2

DIOPT Version :10

Sequence 1:NP_001015473.1 Gene:scro / 3355151 FlyBaseID:FBgn0287186 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_012808332.1 Gene:hoxb2 / 100038155 XenbaseID:XB-GENE-478525 Length:340 Species:Xenopus tropicalis


Alignment Length:189 Identity:40/189 - (21%)
Similarity:63/189 - (33%) Gaps:70/189 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LFRNPDP--ESTNPKRP--------FRYSLLCYDIIITKLGGSKMFDELDQVLLHLKTDTRIVPT 82
            ||.||..  :..|.|||        .||.....|::..|.      .:|.:..:.:|:.| |.|.
 Frog   181 LFSNPISAIQLLNAKRPGIGLWPSHRRYIGYICDLVSDKP------PQLHRKPIIIKSAT-ISPV 238

  Fly    83 EII---------FCNVINFFGRGKLPSRALHMFDEMPQYRCQR-----------------TVKSL 121
            ...         ||.::  .|..|:.| .:..::.|.:||.|.                 :|..:
 Frog   239 PCFNKQRNGCRPFCEIL--IGETKIFS-TMQDYERMKEYRVQEGKVAFPLGVTVYGDIVVSVFHM 300

  Fly   122 NSLLSALLKCGELEKMKERL--------------SSIDEFGKP--DAC----TYNILIH 160
            .|.:...|:.    ||....              :::.:|.||  |||    .|..|.|
 Frog   301 RSTIGGRLQA----KMTNTQILQIQFHTGFIPLGTTVLKFSKPELDACDSPEKYPQLFH 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scroNP_001015473.1 Homeodomain 254..310 CDD:459649
hoxb2XP_012808332.1 Homeodomain 134..190 CDD:459649 4/8 (50%)
Blue background indicates that the domain is not in the aligned region.

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