Protein Alignment scro and hoxd12a

DIOPT Version :10

• Sequence 1: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Sequence 2: NP_001119958.1
• Gene: hoxd12a / 100006598
• ZFINID: ZDB-GENE-990415-118
• Length: 277
• Species: Danio rerio
• Alignment Length: 284
• Identity: 70/284 - (24%)
• Similarity: 108/284 - (38%)
• Gaps: 82/284 - (28%)

  Fly    88 HNLSS---IHHLQNLHSQH----QSTLFNSNHSTPFSVTDILSPIEE-SYRKLELNGNPPS---- 140
            |||.|   :..|.|.||..    |:...|..|         ||.:.: ||.:.|:...|.|
Zfish     4 HNLLSSGYVAPLLNFHSPDSLYLQNLRGNGVH---------LSGLPQMSYSRREVCSLPWSSSNS 59

  Fly   141 ---------------PFRSNSS--SSSINS--PGTLTTSTMANPYAMGTLYH---SPGVQTYCGP 183
                           ||.|||:  |:|:|:  .|:|..|   ..|....:.|   .||.......
Zfish    60 CTAPAQSRAYSGYSQPFFSNSAAVSASLNTHKKGSLEES---GRYYFQDVSHKSEEPGRPNAAYA 121

  Fly   184 TDNLSLAGHYTDMR---------NSASWYGSTAND-------------PRFAISRLMSSSASGTM 226
            ::..|.:...:::.         |..|......:|             |..:...:..:...||:
Zfish   122 SEQSSASNGLSNLERRQLNAVAPNELSCIEQPESDASKQSVSSIAPFQPSLSAQNIRPAFTDGTL 186

  Fly   227 SHMGNMS-----GLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHL 286
            :...:.|     ||..|      |.|   .:.||:|..:|:.|:.|||..|....:::..:|:.|
Zfish   187 NFSNDPSAIDTNGLPWC------PSQ---VRSRKKRKPYTKPQLTELENEFMMNEFINRQKRKEL 242

  Fly   287 ASLIHLTPTQVKIWFQNHRYKCKR 310
            :..:.|:..||||||||.|.|.||
Zfish   243 SDRLELSDQQVKIWFQNRRMKKKR 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	22/55 (40%)
hoxd12a	NP_001119958.1	Homeodomain	210..266	CDD:459649	22/55 (40%)