DRSC/TRiP Functional Genomics Resources

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Protein Alignment AGO3 and Piwil2

DIOPT Version :9

Sequence 1:NP_001036627.2 Gene:AGO3 / 3355150 FlyBaseID:FBgn0250816 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_001351250.1 Gene:Piwil2 / 57746 MGIID:1930036 Length:1042 Species:Mus musculus


Alignment Length:903 Identity:321/903 - (35%)
Similarity:491/903 - (54%) Gaps:68/903 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GRGNLLSLFNKNAGNMGKSISSKDHEIDSGLDFNNSESS--GERLLSSHNIETDLITTLQHVNIS 65
            |||...::..|:......|:  .|..:.:..|...:|:|  ..|:|...:.|..|: .|.....|
Mouse   170 GRGLSANMVRKDREEPRSSL--PDPSVLAAGDSKLAEASVGWSRMLGRGSSEVSLL-PLGRAASS 231

  Fly    66 VGRG----------RARLIDTL-------KTDDHTSN--QFITSESKENITKKTKGPESEAIASE 111
            :|||          .||....|       .|..|:::  ..:|.|.|          |.|.:..:
Mouse   232 IGRGMDKPPSAFGLTARDPPRLPQPPALSPTSLHSADPPPVLTMERK----------EKELLVKQ 286

  Fly   112 NGLFFPDLIYGSKGSSVNIYCNYLKLTTDESKGVFNYEVRFFPPIDSVHLRIKYLNDHKDKLGGT 176
                      ||||:..::..|.:|:.. .::.|:.|.|.|.|.::...:|...|.||:...|..
Mouse   287 ----------GSKGTPQSLGLNLIKIQC-HNEAVYQYHVTFSPSVECKSMRFGMLKDHQSVTGNV 340

  Fly   177 KTFDGNTLYLPILLPNKMTVFIS-KAEDVELQIRILYKKKEEMRN--CTQLYNILFDRVMKVLNY 238
            ..|||:.||||:.|...:.:... |.:|.|:.|:|...|..|..:  |...||::|.||||:|:.
Mouse   341 TAFDGSILYLPVKLQQVVELKSQRKTDDAEISIKIQLTKILEPCSDLCIPFYNVVFRRVMKLLDM 405

  Fly   239 VKFDRKQFDPSRPKIIPLAKLEVWPGYVTAVDEYKGGLMLCCDVSHRILCQKTVLEMLVDLYQQN 303
            ....|..:||:...::...:|::||||..::....|||.|..||||:::...:||:::..:||||
Mouse   406 KLVGRNFYDPTSAMVLQQHRLQIWPGYAASIRRTDGGLFLLADVSHKVIRNDSVLDVMHAIYQQN 470

  Fly   304 VEHYQESARKMLVGNIVLTRYNNRTYKINDICFDQNPTCQFEIKTGC-TSYVEYYKQYHNINIKD 367
            .||:|:...|:|||:||:||||||||:|:|:.:::.|...|.:..|. .:::|||.:.:.|.:|:
Mouse   471 KEHFQDECSKLLVGSIVITRYNNRTYRIDDVDWNKTPKDSFVMSDGKEITFLEYYSKNYGITVKE 535

  Fly   368 VNQPLIYSIKKSRGIPAERENL-------QFCLIPELCYLTGLRDEVRSDNKLMREIATFTRVSP 425
            .:|||:  |.:    |:||:|.       :..|:|||.::||:.::::.|.:.|:::.....:||
Mouse   536 DDQPLL--IHR----PSERQNNHGMLLKGEILLLPELSFMTGIPEKMKKDFRAMKDLTQQINLSP 594

  Fly   426 NQRQMALNKFYENVSNTPAAQEILNSWGLSLTNNSNKISGRQMDIEQIYFSKISVSAGRSAEFSK 490
            .|...||....:.:|....|...|..|||||..:.:||.||.:.:|:|.....|........:.|
Mouse   595 KQHHGALECLLQRISQNETASNELTRWGLSLHKDVHKIEGRLLPMERINLRNTSFVTSEDLNWVK 659

  Fly   491 HAVTNEMLKVVHLSKWIIIHLRNYRQAATSLLDNMKQACESLGMNISNPTMISLDHDRIDAYIQA 555
            ....:..:..:.:..|.:.:.:.....|..|::.:::....:||.||.|..:.|..|||:.||:.
Mouse   660 EVTRDASILTIPMHFWALFYPKRAMDQARELVNMLEKIAGPIGMRISPPAWVELKDDRIETYIRT 724

  Fly   556 LRR--NITMNTQMVVCICHNRRDDRYAAIKKICCSEIPIPSQVINAKTLQNDLKIRSVVQKIVLQ 618
            ::.  .:....||||||....|||.|.||||:||.:.|:||||||.:|:....::|||.|||:||
Mouse   725 IQSLLGVEGKIQMVVCIIMGTRDDLYGAIKKLCCVQSPVPSQVINVRTIGQPTRLRSVAQKILLQ 789

  Fly   619 MNCKLGGSLWTVKIPFKNVMICGIDSYHDPSNRGNSVAAFVASINSSYSQWYSKAVVQTKREEIV 683
            |||||||.||.|.||.|.:|:.|:|.|||||....||..||||||.:.::|||:.|.|...:|||
Mouse   790 MNCKLGGELWGVDIPLKQLMVIGMDVYHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIV 854

  Fly   684 NGLSASFEIALKMYRKRNGKLPTNIIIYRDGIGDGQLYTCLNYEIPQ----FEMVCGNRIKISYI 744
            :.|......:||.|.:.|..||..|::||||:.||||.|..||||||    ||.......|:...
Mouse   855 DSLKLCLVGSLKKYYEVNHCLPEKIVVYRDGVSDGQLKTVANYEIPQLQKCFEAFDNYHPKMVVF 919

  Fly   745 VVQKRINTRIFSGSGIHLENPLPGTVVDQHITKSNMYDFFLVSQLVRQGTVTPTHYVVLRDDCNY 809
            ||||:|:|.::..:..|...|.||||||..||.....||:|::..||||...||||:.:.:..|.
Mouse   920 VVQKKISTNLYLAAPDHFVTPSPGTVVDHTITSCEWVDFYLLAHHVRQGCGIPTHYICVLNTANL 984

  Fly   810 GPDIIQKLSYKLCFLYYNWAGTVRIPACCMYAHKLAYLIGQSIQRDVAEALSEKLFYL 867
            .||.:|:|::|||.:|:||.||:|:||.|.||||||:|.||.:..:.|..|...||:|
Mouse   985 SPDHMQRLTFKLCHMYWNWPGTIRVPAPCKYAHKLAFLSGQILHHEPAIQLCGNLFFL 1042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO3NP_001036627.2 PAZ 291..425 CDD:198017 49/141 (35%)
Piwi_piwi-like_Euk 412..850 CDD:240016 182/443 (41%)
Piwil2NP_001351250.1 Atrophin-1 <73..271 CDD:331285 23/103 (22%)
ArgoL1 408..455 CDD:312283 16/46 (35%)
PAZ_piwi_like 456..573 CDD:239211 47/122 (39%)
Piwi_piwi-like_Euk 581..1025 CDD:240016 182/443 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837114
Domainoid 1 1.000 310 1.000 Domainoid score I1322
eggNOG 1 0.900 - - E1_KOG1042
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H23071
Inparanoid 1 1.050 615 1.000 Inparanoid score I894
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54391
OrthoDB 1 1.010 - - D220258at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42534
orthoMCL 1 0.900 - - OOG6_100694
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3665
SonicParanoid 1 1.000 - - X548
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.700

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