DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AGO3 and AGO1

DIOPT Version :9

Sequence 1:NP_001036627.2 Gene:AGO3 / 3355150 FlyBaseID:FBgn0250816 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_001246314.1 Gene:AGO1 / 36544 FlyBaseID:FBgn0262739 Length:984 Species:Drosophila melanogaster


Alignment Length:927 Identity:204/927 - (22%)
Similarity:364/927 - (39%) Gaps:237/927 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 ITSESKENITK--------------------KTKGPESEAIASENGLFFPDL-IY--------GS 123
            :||.|.:|:..                    .|.|..:.|||:......||: ::        |.
  Fly    79 VTSPSAQNVAAGGATVAGAAATAAQVASALGATTGSVTPAIATATPATQPDMPVFTCPRRPNLGR 143

  Fly   124 KGSSVNIYCNYLKLTTDESKGVFNYEVRFFPP----------IDS-VHLRIKYLNDHKDKLGGTK 177
            :|..:.:..|:.::|..... |.:|::...|.          |:: ||...|.....|      .
  Fly   144 EGRPIVLRANHFQVTMPRGY-VHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLK------P 201

  Fly   178 TFDG-NTLYL--PILLPNKMTVFISKAEDVELQIRILYKKKEEMRNCT-------QLYN------ 226
            .||| |.||.  |:.:.|         |.:||::.:..:.|:.:...|       .|:|      
  Fly   202 VFDGRNNLYTRDPLPIGN---------ERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALE 257

  Fly   227 -----ILFDRVMKV---------LNYVKFDRKQFDPSRPKIIPL-AKLEVWPGYVTAVDEYKGGL 276
                 |.:|.::.:         :.|....|..|........|| ...|||.|:..:|...:..:
  Fly   258 GRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKM 322

  Fly   277 MLCCDVSHR----------ILCQKTVLEMLVDLYQQ---------------------NVEHYQES 310
            ||..|||..          .:|:  ||: :.|:.:|                     .:.|..:.
  Fly   323 MLNIDVSATAFYKAQPVIDFMCE--VLD-IRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQM 384

  Fly   311 ARKMLVGNIVLTRYNNRTYKINDICFDQNPTCQFEIKTG----CTSYVEYYKQYHNINIKDVNQP 371
            .||..|.|:.......:::.:             :::.|    || ..:|:...:.:.::..:.|
  Fly   385 RRKYRVCNVTRRPAQMQSFPL-------------QLENGQTVECT-VAKYFLDKYRMKLRYPHLP 435

  Fly   372 LIY--SIKKSRGIPAERENL---QFCLIPELCYLTGLRDEVRSDNKLMREIATFTRV-----SPN 426
            .:.  ...|...:|.|..|:   |.|:                  |.:.::.|.|.:     |..
  Fly   436 CLQVGQEHKHTYLPLEVCNIVAGQRCI------------------KKLTDMQTSTMIKATARSAP 482

  Fly   427 QRQMALNKFYE--NVSNTPAAQEILNSWGLSLTNNSNKISGRQMDIEQIYF-------------- 475
            .|:..:|...:  :.:|....||    :||:::|:..::.||.:...::.:              
  Fly   483 DREREINNLVKRADFNNDSYVQE----FGLTISNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLF 543

  Fly   476 ---SKISVSAGRSAEFSKHAVTNEMLKVVHLSKWIIIHLRNYRQAATSLLDNMKQACESLGMNIS 537
               :|:|:::.....:....  .:....|.:..|.|......|......|.|..|..:.:..:..
  Fly   544 PPQNKVSLASPNQGVWDMRG--KQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDAG 606

  Fly   538 NPTM-------ISLDHDRIDAYIQALRRNITMNTQMVVCICHNRRDDRYAAIKKICCSEIPIPSQ 595
            .|.:       .:...|:::...:.|:  ||.....:|.:....:...||.:|::..:.:.:.:|
  Fly   607 MPIIGQPCFCKYATGPDQVEPMFRYLK--ITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQ 669

  Fly   596 VINAKTLQNDLKIRSVVQKIVLQMNCKLGGSLWTVKIPF-------KNVMICGIDSYHDPS--NR 651
            .:.||.:.....  ..:..:.|::|.|||| :.::.:|.       :.|:..|.|..|.|:  |:
  Fly   670 CVQAKNVNKTSP--QTLSNLCLKINVKLGG-INSILVPSIRPKVFNEPVIFLGADVTHPPAGDNK 731

  Fly   652 GNSVAAFVASINSSYSQWYSKAVVQTKREEIVNGLSASF-EIALKMYRKRNGKLPTNIIIYRDGI 715
            ..|:||.|.|:::..|::.:...||..|:||:..||:.. |:.:..|:...|..|..||:||||:
  Fly   732 KPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGV 796

  Fly   716 GDGQLYTCLNYEIPQFEMVCGNRIK--------ISYIVVQKRINTRIF-------SG-SGIHLEN 764
            .:||....|.:|:......|   ||        |::||||||.:||:|       || ||    |
  Fly   797 SEGQFPHVLQHELTAIREAC---IKLEPEYRPGITFIVVQKRHHTRLFCAEKKEQSGKSG----N 854

  Fly   765 PLPGTVVDQHITKSNMYDFFLVSQLVRQGTVTPTHYVVLRDDCNYGPDIIQKLSYKLCFLYYNWA 829
            ...||.||..||....:||:|.|....|||..|:||.||.||.::..|.:|.|:|:||..|....
  Fly   855 IPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCT 919

  Fly   830 GTVRIPACCMYAHKLAY 846
            .:|.|||...|||.:|:
  Fly   920 RSVSIPAPAYYAHLVAF 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO3NP_001036627.2 PAZ 291..425 CDD:198017 23/168 (14%)
Piwi_piwi-like_Euk 412..850 CDD:240016 128/492 (26%)
AGO1NP_001246314.1 ArgoN 146..275 CDD:406799 27/144 (19%)
ArgoL1 285..335 CDD:400854 14/49 (29%)
PAZ_argonaute_like 336..456 CDD:239212 19/136 (14%)
Piwi_ago-like 502..942 CDD:240015 121/453 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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