DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL38 and AT3G59540

DIOPT Version :10

Sequence 1:NP_001036440.1 Gene:RpL38 / 3355144 FlyBaseID:FBgn0040007 Length:70 Species:Drosophila melanogaster
Sequence 2:NP_191513.1 Gene:AT3G59540 / 825123 AraportID:AT3G59540 Length:69 Species:Arabidopsis thaliana


Alignment Length:69 Identity:45/69 - (65%)
Similarity:58/69 - (84%) Gaps:0/69 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQ 65
            ||::|.|:||||..|||.|||:||||::....|||:||||:||||.|.|:|||||:||||||||.
plant     1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLS 65

  Fly    66 VKEV 69
            |:::
plant    66 VQDL 69

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL38NP_001036440.1 Ribosomal_L38e 2..68 CDD:460326 44/65 (68%)
AT3G59540NP_191513.1 Ribosomal_L38e 2..68 CDD:460326 44/65 (68%)

Return to query results.
Submit another query.