DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL38 and AT3G59540

DIOPT Version :9

Sequence 1:NP_001036440.1 Gene:RpL38 / 3355144 FlyBaseID:FBgn0040007 Length:70 Species:Drosophila melanogaster
Sequence 2:NP_191513.1 Gene:AT3G59540 / 825123 AraportID:AT3G59540 Length:69 Species:Arabidopsis thaliana


Alignment Length:69 Identity:45/69 - (65%)
Similarity:58/69 - (84%) Gaps:0/69 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQ 65
            ||::|.|:||||..|||.|||:||||::....|||:||||:||||.|.|:|||||:||||||||.
plant     1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLS 65

  Fly    66 VKEV 69
            |:::
plant    66 VQDL 69

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL38NP_001036440.1 Ribosomal_L38e 2..68 CDD:396375 44/65 (68%)
AT3G59540NP_191513.1 Ribosomal_L38e 2..68 CDD:396375 44/65 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 94 1.000 Domainoid score I2548
eggNOG 1 0.900 - - E1_KOG3499
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H87098
Inparanoid 1 1.050 97 1.000 Inparanoid score I2211
OMA 1 1.010 - - QHG53929
OrthoDB 1 1.010 - - D1619070at2759
OrthoFinder 1 1.000 - - FOG0001834
OrthoInspector 1 1.000 - - oto3566
orthoMCL 1 0.900 - - OOG6_101624
Panther 1 1.100 - - LDO PTHR10965
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1359
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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