DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17883 and tbc-20

DIOPT Version :9

Sequence 1:NP_001036448.1 Gene:CG17883 / 3355139 FlyBaseID:FBgn0040005 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_497068.2 Gene:tbc-20 / 175139 WormBaseID:WBGene00013196 Length:411 Species:Caenorhabditis elegans


Alignment Length:349 Identity:112/349 - (32%)
Similarity:181/349 - (51%) Gaps:49/349 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 KRLEIEKLINKNIDKNIS--FDVLVKLSLAPYGLVNDDFRRILWPQLA-----GVDINHLG---- 76
            ||..|::.:.|:..:::|  .|.|...:::|.|||:|:||.::||.|:     ..|::.:.    
 Worm    49 KREAIDRFLKKHRKEDLSLYIDELRDFAISPGGLVDDEFRAVIWPVLSANLVQNDDLDDVSSSYD 113

  Fly    77 -----------QAP--------TLDKFQCHPEYNQVVLDVNRSLKRFPPGIPYEQRIALQDQLTV 122
                       :.|        ||:..:.|.|:|||.|||:|:|.||||.|....|..||.:|..
 Worm   114 SDFESAQSDFDEEPAYEESEELTLEDLKGHKEWNQVELDVHRTLSRFPPNISDTHRDVLQTELIP 178

  Fly   123 LILRVIQKYPNLRYYQGYHDVAVTFLLVVGEEIAFAIMEQLSTT-HFSECMQETME-ATQRRLMF 185
            ||:||:...|...||||:||:.:|.|||.||..|..:...|:.. .|:..:.:|:| :..|.|..
 Worm   179 LIVRVLSINPRFNYYQGFHDICLTVLLVCGEVDALPVCSNLAKNGSFNNYLLKTLEKSVVRELDL 243

  Fly   186 IWPIIKFENPELYQFLQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA 250
            ::.|:...:|.|.|.:::..:||:|.|.|.||||.|:|..|:.:||.:|.||||.....|:|:||
 Worm   244 LYVILSRVDPSLEQVMRSVELGTMFGLSWPLTWFSHTLKQYQQIVRFFDVFLASSPLLPIYVSAA 308

  Fly   251 ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTS---SSLLNKYSLTLIEKDVEELICQE 312
            ::::|...||..:.:|..:|.||:.:|.:||.:.::|.|   |.|:..              |..
 Worm   309 VVVFRRASILACEREMPFLHRLLTEMPHELPIDTIIKDSVYLSKLMPP--------------CLL 359

  Fly   313 RRKRKTDEALIVKRRQPATSNRIP 336
            :.|...:...||.:...|....||
 Worm   360 KTKYTNEYRKIVSKPSKAAVKTIP 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17883NP_001036448.1 RabGAP-TBC 91..260 CDD:278964 69/170 (41%)
tbc-20NP_497068.2 RabGAP-TBC 147..318 CDD:382990 69/170 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167393
Domainoid 1 1.000 140 1.000 Domainoid score I2963
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32574
Inparanoid 1 1.050 174 1.000 Inparanoid score I2716
Isobase 1 0.950 - 0 Normalized mean entropy S3290
OMA 1 1.010 - - QHG54480
OrthoDB 1 1.010 - - D1107565at2759
OrthoFinder 1 1.000 - - FOG0003660
OrthoInspector 1 1.000 - - oto17853
orthoMCL 1 0.900 - - OOG6_103152
Panther 1 1.100 - - LDO PTHR20913
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R538
SonicParanoid 1 1.000 - - X2532
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.850

Return to query results.
Submit another query.