DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17528 and Rp1l1

DIOPT Version :9

Sequence 1:NP_001036462.1 Gene:CG17528 / 3355134 FlyBaseID:FBgn0261387 Length:748 Species:Drosophila melanogaster
Sequence 2:XP_017455389.1 Gene:Rp1l1 / 683404 RGDID:1586886 Length:1860 Species:Rattus norvegicus


Alignment Length:322 Identity:71/322 - (22%)
Similarity:127/322 - (39%) Gaps:71/322 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 NSASG---SACLSNTPTADHIKKRIPS-----SRTPTRKALRIKFYRNGDRFYPGITIPVSNERY 182
            ||..|   .|...:.|...|.:..:||     |.|....|.:|.|.:.||..:.|:.:.|....:
  Rat     2 NSTPGDTRDAPAPSHPAPSHRQCLLPSVAHTPSVTEVTPAKKITFLKRGDPQFAGVRLAVHQRTF 66

  Fly   183 RSFERLFEDLTRLLEENVKIPGAVRTIYNLCG-KKITSLDELEDGQSYVCSCNNENFKKVEYNTG 246
            ::|..|.::|:    :.:.:...||::....| ..:::|::|:||..|:||             .
  Rat    67 KTFSALMDELS----QRMPLSFGVRSVTTPRGLHGLSALEQLQDGGCYLCS-------------D 114

  Fly   247 SQPLSNLPLSNSRSNSHRLAKCRPSSPLKNGLLAGSSPFPACGGGTGNG---SPLIASRLSDRVT 308
            .:|                    |.:|.::|.|...|| ||.......|   :|..:|  .....
  Rat   115 RKP--------------------PKTPRESGRLQRKSP-PAGRSQVSQGGHEAPETSS--YSWKN 156

  Fly   309 VVHPRIVTLIRSGTKPRRIMRLLLNKRNSPSFDHVLTAITQVVRLDTGYVRKVFTLSGIPVVRLS 373
            .:.||.:||:::| .|.....::|:.:|:.:....|:..::::|..   |::|:|..|..|..|.
  Rat   157 PMAPRRLTLVKNG-YPGCQQTVVLSHKNTRNLAGFLSKASELLRFP---VKQVYTTHGKKVDSLQ 217

  Fly   374 DFFGSDDVFFAYGTERINTAEDFKLEAEEQRAINVIRKTMRTTGTT------CKGPKPKMPI 429
            .......:....|.|...     :||.|..|.    .:|...:|.|      |.||..|..:
  Rat   218 TLLDGPSLLVCAGNEAFR-----RLEMENDRG----NRTRMVSGVTARSERGCWGPNAKQSV 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17528NP_001036462.1 DCX 153..244 CDD:214711 20/91 (22%)
DCX 308..396 CDD:214711 18/87 (21%)
PKc_like 477..734 CDD:304357
S_TKc 477..734 CDD:214567
Rp1l1XP_017455389.1 DCX 42..119 CDD:176357 20/113 (18%)
UBQ 156..238 CDD:294102 18/90 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3757
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.