DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17528 and DCX-EMAP

DIOPT Version :9

Sequence 1:NP_001036462.1 Gene:CG17528 / 3355134 FlyBaseID:FBgn0261387 Length:748 Species:Drosophila melanogaster
Sequence 2:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster


Alignment Length:694 Identity:144/694 - (20%)
Similarity:234/694 - (33%) Gaps:258/694 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PQSVPSKANVVTEASIIEKTNQPH---------------------------NVQEDNNYNR---- 63
            ||..|   |...|.::.....|||                           |:..:|:.||    
  Fly     2 PQISP---NAPLEGNVSPPPTQPHLDDNLHNGNGNGNGIHSSSSNINKHGSNINGNNDSNRSSPA 63

  Fly    64 -------------------DCDSPESSSSEQ----DKELDDLRNLHSSSLTNSVVVGKSTGSLNG 105
                               |.|..:.::|||    |:::.|.....:.:.|.:....:|.....|
  Fly    64 KSPKRPVSSSFRIQNTSRYDNDEEDLAASEQVAGGDRQVPDYWQQRNGATTGATSGRQSRAISPG 128

  Fly   106 VYSITSVTSETKTLESVVTTNSAS--GSACLSNTPTADHIKKRIPSSRTPTRKALRIKFYRNGDR 168
            .....|..||...:..:|.:.|..  .||..|......:.|.|            |:.||||||.
  Fly   129 YLDNMSENSEQPPVVPLVRSKSRPEISSAAASRYNNLSYWKAR------------RVVFYRNGDP 181

  Fly   169 FYPGITIPVSNERYR------SFERLFEDLTRLLEENVKIPGAVRTIYNLCGKKITSLDELEDGQ 227
            |:||:.:     |||      |.:.|.:.::..::    :|...|.::::.|.:...|||||||.
  Fly   182 FFPGVEL-----RYRPGRDVTSLDNLLDKISPKMD----LPRGARYVFSMDGDRKYHLDELEDGA 237

  Fly   228 SYVCSCNNENFKKVEYNTGSQPLSNLPLSNSRSNSHRLAKCRPSSPLKNGLLAGSSPFPACGGGT 292
            .||.| :.:.||...|..                             |||:      :.|..|..
  Fly   238 FYVVS-SFKAFKPASYGK-----------------------------KNGM------WYASPGNQ 266

  Fly   293 GNGS-PLIASRLSDRVTVVHPRIVTLI-------RSGTKPRRIM---------RLLLNKRNSPSF 340
            |.|| |  |||   :.:::...:.||.       ||..:..||:         |:|||.|.|..|
  Fly   267 GWGSKP--ASR---KPSIMEADLGTLSTTSGSIKRSAGRVIRIINNLDHSVQCRVLLNLRTSQPF 326

  Fly   341 DHVLTAITQVVRLDTGYVRKVFTLSGIPVVRLS----DFFGSDDVFFAYGTERINTAEDFKLEAE 401
            :.||..:.||::::.  .:|::|.:|..|...|    :|...|..:.|.||..|           
  Fly   327 EEVLEDLGQVLKING--AKKMYTGTGQEVRSFSQLRNEFADVDTFYLATGTALI----------- 378

  Fly   402 EQRAINVIRKTMRTTGTTCKGP------KPKMPIKSKK---------VYPP-------------- 437
               |.:.||::..........|      .||:|::..:         :|.|              
  Fly   379 ---AGSPIRRSRSRPSVVAAAPILPTDELPKVPLRGARPRSKSRPRILYAPESEILRPNGEYTML 440

  Fly   438 -LVDSEPFK------------------AETTPEDDR------HAALLTSTGMEINELPSNIRNTY 477
             ::..||.|                  |:.:|.|.:      |..........:..|||. ...|
  Fly   441 DIMKEEPTKVTIRGLRRTFYPPVHHAPADNSPPDKKLQLQWVHGYRGIDARRNLWVLPSG-ELLY 504

  Fly   478 SLGRIIGDGNFAIVF----KIKHRQTGHSYALKIIDKNKCK---------GKEHYIDAEVRVMKK 529
            .:..:      |::|    ..:...|||:..:..:|.:..:         |::....|.||:.  
  Fly   505 YVAAV------AVLFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGRDRKSQAHVRIW-- 561

  Fly   530 LNHPHIISLILSVDQNTNMYLVLEYVSG-GDLFDAITQVTRFSE 572
                           :|.....| ||.| |:|...:|.|. ||:
  Fly   562 ---------------STESLQTL-YVFGMGELDSGVTAVA-FSQ 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17528NP_001036462.1 DCX 153..244 CDD:214711 30/96 (31%)
DCX 308..396 CDD:214711 28/107 (26%)
PKc_like 477..734 CDD:304357 22/110 (20%)
S_TKc 477..734 CDD:214567 22/110 (20%)
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711 32/108 (30%)
UBQ 300..375 CDD:294102 21/76 (28%)
HELP 446..514 CDD:281450 12/74 (16%)
WD40 500..965 CDD:225201 22/115 (19%)
WD40 521..911 CDD:295369 19/87 (22%)
WD40 repeat 530..573 CDD:293791 9/60 (15%)
WD40 repeat 582..624 CDD:293791 4/8 (50%)
WD40 repeat 627..664 CDD:293791
WD40 repeat 673..712 CDD:293791
WD40 repeat 718..801 CDD:293791
WD40 796..1072 CDD:295369
WD40 repeat 806..838 CDD:293791
WD40 repeat 846..880 CDD:293791
WD40 repeat 886..918 CDD:293791
WD40 repeat 931..969 CDD:293791
WD40 repeat 1002..1037 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3757
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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