DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conu and RGD1

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_009819.1 Gene:RGD1 / 852563 SGDID:S000000464 Length:666 Species:Saccharomyces cerevisiae


Alignment Length:599 Identity:117/599 - (19%)
Similarity:225/599 - (37%) Gaps:134/599 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LQSNSQSIEPEASYEDGEMEAE------------W-LVSAGYPELTKPFEQGLEVSKKDLEPILT 75
            ::.||:.:|.:.|  |....||            | .:....|..||...:|.:.:|:..|.:|.
Yeast   144 VKENSKRLEKDVS--DAIHSAEKAQSRYNSLCQDWDKLRMTDPTKTKLTLRGSKTTKEQEEELLR 206

  Fly    76 TLSKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPDIRDVFREFDEQGTVTRSR------------S 128
            .:.....|...::..:.:......||.||:...:::|:..|.|...|:...:            .
Yeast   207 KIDNADLEYKQKVDHSNSLRNTFITKERPRIVQELKDLILEIDTAMTIQLQKYTIWTENLVLNTG 271

  Fly   129 ATPDSLDSLQIDEAWTNN-----SLPTFVNVYEKNTETAIQCVEQSNEIYLKQNL-----RRTPS 183
            .|...|||.:..:::..:     .|.:|:|.|.:..:         :.:.:.:||     ::.||
Yeast   272 VTISPLDSTKSMKSFAGSVSNERDLYSFLNKYNQTGK---------HSLLINKNLIPVSYKKHPS 327

  Fly   184 --------APPKSGTYADIFRGSQVRCDIPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIGR 240
                    :|||       |.....|..||      ..::............:.:.:.|..::..
Yeast   328 MNHGQKNKSPPK-------FAVDPSRNSIP------KRMISTHNESPFLSSSSNTAAVPNANLNS 379

  Fly   241 SKESRSENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDTCD---- 301
            :..|.:.|........||  :|::.|..|.:.|      |...:..|::|    .:..|.|    
Yeast   380 ATPSLNTNKQLPPTMASS--ISSTSNAAGAMSP------SSSIVTSDTTS----SITKTLDPGNN 432

  Fly   302 ---IPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRRKEEGNLFGVSINA 363
               ||..|...  |.|:..:..:||           .|.:....:|.||        .|||.:.:
Yeast   433 SPQIPEELINS--LDSDRPISHIQT-----------NNNMPPGVQKNFK--------TFGVPLES 476

  Fly   364 LIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELESTFYQNPDNL 428
            ||..:|       .:||..:.:.|..:.:.|..:||:.|    |....|..::|:....::|.|:
Yeast   477 LIEFEQ-------DMVPAIVRQCIYVIDKFGLDQEGIYR----KSANVLDVSKLKEEIDKDPANI 530

  Fly   429 DNLFRT-----ATVHELSSLLKRWLRELPQPLLTNELIQLFYQCHTLPS-IDQMNALSILCHLLP 487
            ..:..:     :.::.:.||||.:...||..:|...|......|..:.. ..:.|.:..|.:.||
Yeast   531 SMILPSKPHSDSDIYLVGSLLKTFFASLPDSVLPKALSSEIKVCLQIEDPTTRKNFMHGLIYNLP 595

  Fly   488 PENRNTLRSLLSFFNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQVRMAAQCCR 552
            .....|||:|:.....::..:..|:||:..:..|..|::.|   .:|.|.|.:..|: ||.:   
Yeast   596 DAQYWTLRALVFHLKRVLAHEAQNRMNLRALCIIWGPTIAP---ANPDDANDVNFQI-MAME--- 653

  Fly   553 LTNILILRGEKLFQ 566
               :|:...::.|:
Yeast   654 ---VLLEVSDQAFE 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 49/217 (23%)
RGD1NP_009819.1 F-BAR_Rgd1 39..268 CDD:153336 24/125 (19%)
RhoGAP_fRGD1 470..663 CDD:239863 48/213 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 50 1.000 Inparanoid score I1843
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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