DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and arhgap18

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001072336.1 Gene:arhgap18 / 779789 XenbaseID:XB-GENE-988160 Length:662 Species:Xenopus tropicalis


Alignment Length:617 Identity:159/617 - (25%)
Similarity:266/617 - (43%) Gaps:155/617 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NSNTDL-----HHSDDQDFSE--FLNEYYLQ-----------SNSQSIEPEASYEDGEMEAEWLV 48
            |.|..|     :.|..||..:  .|::|:.:           .:.|::..|.  ::||:|.|||.
 Frog    50 NVNPSLEKVAFNRSGSQDSLDELSLDDYWTEVENIKQDTNTSQDEQNVVKEP--DEGELEEEWLK 112

  Fly    49 SAGYPELTKPFEQGLEVSKKDLEPI--LTTLSKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPDIR 111
            .||...|..      |.:....|.|  |:||:|..:.|:.:.:.|:.:|  :|.|:|..:.||:|
 Frog   113 EAGLSNLFN------ECAADPQESIVLLSTLTKTQSAAVQKRIDTVTQT--LRKKNRQHQIPDVR 169

  Fly   112 DVFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPTFVNVYEKNTET--AIQCVEQSNEIYL 174
            |||::              |.:|.    |:|...|...:..:...||.|.  ..:||        
 Frog   170 DVFKQ--------------PVNLQ----DKAGDINGFQSTESNDPKNEEANEKAECV-------- 208

  Fly   175 KQNLRRTPSAPPKSGTYADIFRGSQVRCDIPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIG 239
                     ||..|....|         |:|:...| :.|       .|.|....|....|..:.
 Frog   209 ---------APEASRNVGD---------DLPVPVTD-INL-------EISFAEQASNLKDFTRVR 247

  Fly   240 RSKESRSENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDTCDIPS 304
            ..||..|                        |||      :|. :.:|.:..             
 Frog   248 NEKEDDS------------------------LLP------NFR-LTQDKTGT------------- 268

  Fly   305 TLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRRKEEGNLFGVSINALIRRDQ 369
               |.:..::..|||::.::..:||..::|.....|..::..|.:.:|.| ||.|.::.|:.:||
 Frog   269 ---TKIGDLAPQDMKKVSSLALIELTALYDVLGTELKMQRAAKIKVRESG-LFRVPLSTLLDQDQ 329

  Fly   370 -QVTGTDSSLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELESTFYQNPDNLDNLFR 433
             :..||   .|||..:.|||.:.:.|...||:|||.|...:.:.|..|||:.||:...|.||:.:
 Frog   330 KRAPGT---RVPLIFQSLIGHIEKGGLDTEGILRIPGASARIKALIEELEAKFYEGTFNWDNVKQ 391

  Fly   434 TATVHELSSLLKRWLRELPQPLLTNELIQLFYQCHTLPS-IDQMNALSILCHLLPPENRNTLRSL 497
                |:.:||||.::||||.||||.|.::.|:....||: ..::.||::|..|||..:|:||::|
 Frog   392 ----HDAASLLKFFIRELPLPLLTVEYLKAFHSVQYLPTKKHRLQALNLLVILLPEIHRDTLKAL 452

  Fly   498 LSFFNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSI----AEQVRMAAQCCRLTNILI 558
            |.|...:::.::.|||.:.|||.||||::|.   :|.....::    .|....||:...:...:|
 Frog   453 LEFLQRVVDHREQNKMILKNVAMIMAPNLFS---VHTYQLKTVDQGALEGAFSAARTASVMLFMI 514

  Fly   559 LRGEKLFQVPNNLIVE-------SQKTMMGKK 583
            .....|:.:|..::.:       :||.:..:|
 Frog   515 KYQNLLWTIPKFIVAQVRRQNIVNQKKLSKEK 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 77/232 (33%)
arhgap18NP_001072336.1 RhoGAP_ARHGAP18 316..532 CDD:239856 77/225 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6360
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 158 1.000 Inparanoid score I4169
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D309300at33208
OrthoFinder 1 1.000 - - FOG0002326
OrthoInspector 1 1.000 - - otm49450
Panther 1 1.100 - - O PTHR14963
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.070

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