DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and Syde1

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_082151.1 Gene:Syde1 / 71709 MGIID:1918959 Length:737 Species:Mus musculus


Alignment Length:589 Identity:135/589 - (22%)
Similarity:198/589 - (33%) Gaps:184/589 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 QSIEPEASYEDGEMEAEWLVSAGYPELTKPFEQGL-----------------EVSKKD-----LE 71
            ||:||.:        ..|::....|    |.|..|                 .:.::|     .|
Mouse    74 QSLEPSS--------RRWVLGGAKP----PEEISLGPRTPSSGEPAGEIWYNPIPEEDPRPPAPE 126

  Fly    72 PILTTL--SKPHAEAIVQLVRTLNKTVRVRTKS---------RPKRKPDIRDVFREFDEQGTVT- 124
            |:.:.|  |:|....|.....|...|...||||         :.|:.|::|   |....:.|.| 
Mouse   127 PLGSQLASSEPEGPNIQGAAPTSPPTKTSRTKSPGPARRLSMKMKKLPELR---RRLSLRSTRTG 188

  Fly   125 --RSRSATPDS------LDSL-----QIDEAWTNNS-------------------LPTFVNVYE- 156
              |.|:|...|      |||.     |...|..:.|                   .||....|| 
Mouse   189 RDRERTAPAGSVISRYHLDSSVGTPGQASVAGGSRSPRGGYLSDGDSPERPGGPPSPTAFRPYEV 253

  Fly   157 ---KNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSGTYADIFRGSQVRCDIPLYSADGVELLGYS 218
               ..|..|......|..:|....||.:|.|.|:           .:.|   |...|||   ..:
Mouse   254 GPSARTPPAALWGRLSLHLYGLGGLRPSPGATPR-----------DLCC---LLQVDGV---ARA 301

  Fly   219 RIGTIQFPRNRSVSDPFCSIGRSKESRSENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFES 283
            |.|.:     ||..| |..:..:..                    .|.|..|||..  .||:::.
Mouse   302 RTGPL-----RSGPD-FLRLDHTFH--------------------LELEAARLLRA--LVLAWDP 338

  Fly   284 ICRDSSSLDSCEVLDTCDIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKR 348
            ..|.........||    :| |:|..............|.:|:.:|.       :|..:..|   
Mouse   339 GVRRHRPCAQGTVL----LP-TIFRGCQAQQLAVRLEPQGLLYAKLT-------LSEQQEAP--- 388

  Fly   349 RRKEEGNLFGVSINALIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELL 413
             ...|..:||:.:..|:.|:|     ....|||.:.|.:|::..||.|..||.|:.|    :..:
Mouse   389 -ATAEPRVFGLPLQLLVEREQ-----SPGQVPLIIRKCVGQIECRGLRVVGLYRLCG----SAAV 443

  Fly   414 YNELESTFYQN-----------PDNLDNLFRTATVHELSSLLKRWLRELPQPLLTNELIQL---- 463
            ..||...|.|:           ||          ::.::.:||.:|||||.||:|..|.|:    
Mouse   444 KKELRDAFEQDSAAVCLSEDVYPD----------INVITGILKDYLRELPTPLITQPLYQVVLEA 498

  Fly   464 FYQCHTLPSIDQMNALSI--LCHLLPPENRNTLRSLLSFFNIIINLKDINKMNVHNVATIMAPSM 526
            ..|.|  ||...:.....  |...||...|.||..||....::.:....|:|...|:|....|.:
Mouse   499 MAQGH--PSRASLGPEGTRGLLRCLPDVERATLTLLLDHLRLVSSFHTHNRMTPQNLAVCFGPVL 561

  Fly   527 FPPR 530
            .|.|
Mouse   562 LPAR 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 54/192 (28%)
Syde1NP_082151.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..255 42/195 (22%)
CAC1F_C 73..>250 CDD:293490 40/190 (21%)
RhoGAP 396..601 CDD:295372 54/191 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 601..654
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 675..708
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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