DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conu and arap1a

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_700481.5 Gene:arap1a / 571767 ZFINID:ZDB-GENE-030131-6226 Length:1092 Species:Danio rerio


Alignment Length:811 Identity:146/811 - (18%)
Similarity:265/811 - (32%) Gaps:288/811 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SNTDLHHSDD-QDFSEFLN--EYYLQSNSQSIEP-EASYEDGEMEAEWLVSAGYPELTKP----- 58
            |.|.|..::: |:..::::  |..|.....|:|| ...:::|.:...:   .||.|:..|     
Zfish   122 SRTFLFRAENTQERDDWVSCIEKILSDRKHSLEPRNLFFKNGSVSVSF---EGYLEMLSPRTKVY 183

  Fly    59 ----------------FEQGLEVSKKDLEPILT---------TLSKPH----------------A 82
                            :.||:.::..|:.....         ||:.|:                .
Zfish   184 TLINRDKLFLFKSHEEYFQGMGITDIDMRMANVRDGENKRSFTLTTPYRAFSFMVDSESEKQRWC 248

  Fly    83 EAIVQLV-RTLNKTVRVRTKSRPKRKPDIRDVFREFDEQGTVT-------------RSRSATPDS 133
            |::.:.| |:|:......:..|.:......|......|..:|.             |:.......
Zfish   249 ESLTECVSRSLSCDGVCESVWRVQANRICADCSSSMPEWASVNLCVLLCEKCAGAHRNLGQNISK 313

  Fly   134 LDSLQIDE-AWTNNSLPTFV--------NVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSG 189
            :.||::|| .||::.:..|:        ..:..|...:.:....:|.   :|.|:.. :...|:|
Zfish   314 VRSLKLDERVWTDDLIRVFLMLGNGKANKFWGANIPPSERLSASANS---EQRLKHI-TDKYKNG 374

  Fly   190 TYADIFR--GSQVRCD----IPLYSAD----------GVELLGYSRIGTIQFPRNRSV------- 231
            .|....:  |.|...:    :.:.|||          |.:...|:||.  :||...|:       
Zfish   375 KYRKYHKLFGQQEALNNALCLAMQSADLLETLTLLNCGADAACYTRIP--EFPTPLSLAKRYSQT 437

  Fly   232 -----------SDP---------------------------------------FCSIGRSKESRS 246
                       |:|                                       :|.:|....|..
Zfish   438 VQAELLTQYITSEPITTEVKDADIQSQCGYLFKTASSARPITEHKPKADFSQRWCCLGDGMFSYY 502

  Fly   247 ENDARSQKK---KSSEVLSASENECGR--------LLPMPYNVLSFESICRDSSSLDS------- 293
            .|:....|.   |.||::..|.|..|:        |......|..|.:   |..|:..       
Zfish   503 RNEQSHHKNGGMKISEIICLSVNSPGKHGYEHTFELYSEEGRVYLFGT---DDGSIAKNWIRAVT 564

  Fly   294 --------CEVLDTCDIPSTL----------------FTDVVLISET----DMKRLQ-------- 322
                    .||..|||....|                |...||:.:|    |:::|.        
Zfish   565 MAVLPPALFEVCGTCDRLGRLRCTEASHGIGWFCLSGFKLHVLLEDTVQTIDLRKLLRLKFSNTG 629

  Fly   323 ---TILW----LELATIFDRNKVSLDKRKPFK------RRRKEEGNLFGVSINALIRRDQQVTGT 374
               .::|    |.|         ..|:|..|.      :::...||          .|..|...|
Zfish   630 GAIVLVWRGGPLHL---------QADRRPHFVGWQTCIQQKSGAGN----------ERLSQQQLT 675

  Fly   375 DSSLVPLFLEKLIGELLRRGSREEGLLRIGG-HKQKTELLYNELESTFYQNPDNLDNLFRTAT-- 436
            |.. :|:.:::.:..:.|.|....|:.|:.| :...|:||            |...|..||.|  
Zfish   676 DLG-IPVTIDRCLDHITRYGLLSPGIYRLSGINSHVTKLL------------DKFQNNARTVTWC 727

  Fly   437 -----VHELSSLLKRWLRELPQPLLTNE--------LIQLFYQCHTLPSIDQMNALSILCHLLPP 488
                 ||::::.|||:|||:...:...:        :..|...|      :::....||...||.
Zfish   728 ESEYSVHDVANTLKRFLREVKGGVFNGQENNASWLRVAGLEDGC------EKIQRYQILLSNLPD 786

  Fly   489 ENRNTLRSLLSFFNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQV--RMAAQCC 551
            .||..|:.|:.....:.||.:.|:|.:.|:..:..|::|     .....::.|.||  .:....|
Zfish   787 INREALKVLIHHLVCVQNLSNENQMTIRNLGIVFGPTLF-----QTDGKDTTASQVVEELIQNYC 846

  Fly   552 RLTNILILRGEKLFQVPNNLI--VESQKTMM 580
            .:..:.....||...:.:.::  .:||||::
Zfish   847 SIFKVSESELEKQLNMMSVILDNHKSQKTLI 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 49/239 (21%)
arap1aXP_700481.5 PH 56..147 CDD:278594 5/24 (21%)
PH-like 57..149 CDD:302622 6/26 (23%)
PH-like 171..251 CDD:302622 11/79 (14%)
ArfGap 266..378 CDD:279720 19/115 (17%)
PH-like 463..566 CDD:302622 16/105 (15%)
PH 465..567 CDD:278594 16/104 (15%)
PH-like 580..660 CDD:302622 14/88 (16%)
RhoGAP_ARAP 665..845 CDD:239850 48/213 (23%)
UBQ 887..968 CDD:294102
PH-like 973..1090 CDD:302622
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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