DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conu and dlc1

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_017211480.1 Gene:dlc1 / 567965 ZFINID:ZDB-GENE-130206-12 Length:1669 Species:Danio rerio


Alignment Length:616 Identity:132/616 - (21%)
Similarity:219/616 - (35%) Gaps:169/616 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RPKRKPDIRDVFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPTFVNVYEKNTETAIQCVE 167
            :|....|:::..:        |:::...|.|.|         .|:.....:...:..|.....||
Zfish   924 QPSEDQDVKENHQ--------TQNKRKEPSSTD---------ENNRRNRQSSDNRQMEDEESRVE 971

  Fly   168 QSNEIYLKQNLRRTPSAPPKS----GTYADI--------FRGSQVRCDIPLYSADGVELLGYSRI 220
            :...|:........|...||:    |:|..:        .|||....|..:...|.|.   :|.:
Zfish   972 EGGVIFFYLPEGHKPGTFPKALADGGSYHGVDNTSRRPPRRGSSASLDSRMSIYDNVP---FSEV 1033

  Fly   221 GTIQ-------------FPRNRSVSD-----PFCSIGRSKESRSENDARSQKKKSS--------- 258
            |..:             ..|.|.:..     |...||..:|...|.:..|.....|         
Zfish  1034 GDDEDEVGEEEPKLEDVLERVRGLQQLVNEWPETGIGEEEEDEEEEEGDSDSALDSASPCPSSPL 1098

  Fly   259 -EVLSASEN-----ECGRLLPMPYNVLSFESICRDS---SSLDSCEVLDTCDIPS-------TLF 307
             ..|..:||     ..|..|......||....| ||   :||...........||       :|.
Zfish  1099 QNRLEETENGSDQDSTGNPLAERDETLSSRERC-DSGVEASLTRANRTQKLRWPSFQSSHRPSLS 1162

  Fly   308 TDVVLI---SETDMKRLQTILWLELATIFDR----NKVSLDKRKP-FKRRRK----EEGNLFGVS 360
            :.|:.:   |...|..||....|:|..:.:|    ||.......| |.:|.|    ::.::|||.
Zfish  1163 STVLQVGCQSVLQMNLLQKYSLLKLTALLERYTPTNKHGFSWAVPKFMKRIKVRDYKDRSVFGVP 1227

  Fly   361 INALIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELES------ 419
            :..:::|..|.       :|..:::.:..|..:...:.||.|..|.|.:.:.|....||      
Zfish  1228 LQVIVQRSGQP-------LPQSIQQAMRYLRSQCLDQVGLFRKSGVKSRIQALRQMNESCGAVGG 1285

  Fly   420 -TFYQNPDNLDNLFRTATVHELSSLLKRWLRELPQPLLTNELIQLFYQCHT-LPSIDQMNALSIL 482
             ..|:.          ...::::.:||::.|:||:||||::|...|.|.:. :|...::.|:...
Zfish  1286 GVNYEG----------QLAYDVADMLKQYFRDLPEPLLTSKLSDTFLQIYQYVPKEQRLQAVRAA 1340

  Fly   483 CHLLPPENRNTLRSLLSFFNIIINLKDINKMNVHNVATIMAPSMF----------PPRYIHPSD- 536
            ..|||.|||..|::||.|.:.:......|:|...|:|..:|||:|          .||.::..: 
Zfish  1341 VLLLPDENREALQTLLCFLSDVTASVGENQMTCTNLAVCLAPSLFHLNTLRRESSSPRVMNRKNT 1405

  Fly   537 ---------NNSIAEQVRMA--AQCCRLTNILILRGEKLFQVPNNLIVESQKTMMGKKGWHRHRN 590
                     |.::|....:|  .|.||          ||||:|..:              .|.||
Zfish  1406 LGKPDQRDLNENLAATHGLAHMIQECR----------KLFQIPEEM--------------SRCRN 1446

  Fly   591 S----------NEITAKPSGKASNVGVGHDS 611
            |          .|:.|:..|..:...:..||
Zfish  1447 SYMEQGLSPMRMEVLAENCGSCNYQSLLKDS 1477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 61/249 (24%)
dlc1XP_017211480.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.