DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and arhgap28

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001007436.1 Gene:arhgap28 / 492794 ZFINID:ZDB-GENE-041114-147 Length:638 Species:Danio rerio


Alignment Length:596 Identity:156/596 - (26%)
Similarity:256/596 - (42%) Gaps:130/596 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QDFSEFLNEYYLQSNSQSIEP--EASYEDGEMEAEWLVSAGYPELTKPFEQGLEVSKKDLEPILT 75
            :|:...:......:::...||  :||.::.|:|..||..||...|... .||    ....|.:|:
Zfish    64 EDYWSEVKNIQEDTHTHQQEPAEQASTDEAELEEAWLQDAGLTTLITG-AQG----DGPTEALLS 123

  Fly    76 TLSKPHAEAIVQLVRTLNKTVRVRTKSR-PKRKPDIRDVFREFDEQGTVTRSRSATPDSLDSLQI 139
            ||:  |::|.:...|..|.|..:|.|:| |.|  .:||||              :||:....|  
Zfish   124 TLT--HSQAAMVKKRLDNYTHTLRKKNRQPTR--HVRDVF--------------STPEPASEL-- 168

  Fly   140 DEAWTNNSLPTFVNVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPP--KSGTYADIFRGSQVRC 202
                   :.|                |..:.||..|......|.|||  ...|.|| .:||.   
Zfish   169 -------TSP----------------VSPNGEISPKPPQSNPPKAPPACPDFTSAD-SKGSS--- 206

  Fly   203 DIPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIGRSKESRSENDARSQKKKSSEVLSASENE 267
                           |.:.||..    |.|.|:          ||.....||.:..:       |
Zfish   207 ---------------STLRTIIL----SFSTPY----------SEGTRGQQKLREMQ-------E 235

  Fly   268 CGRLLPMPYNVLSFESICRDSSSLDSCEVLDTCDIPSTLFTDVVLISETDMKRLQTILWLELATI 332
            |.::......:|.|:.:                 .|....|.|:.:|..||:::..|..:||.|.
Zfish   236 CRKIRKEDRELLCFQVV-----------------KPRQGTTRVMDLSSDDMRKIGYISLIELTTF 283

  Fly   333 FDRNKVSLDKRKPFKRRRKEEGNLFGVSINALIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSRE 397
            :....:.|.:.:....:.::.| :|||.:..|::.|:::  ...|.:|||.:||:.:|.:.|.:.
Zfish   284 YGNLGIELRRNRVMPVKARDTG-IFGVPLLTLLQNDRKI--YPGSRIPLFFKKLLAKLEQTGLQT 345

  Fly   398 EGLLRIGGHKQKTELLYNELESTFYQNPDNLDNLFRTATVH--ELSSLLKRWLRELPQPLLTNEL 460
            ||:||:.|...:.:.|..||:..||      |:.|....||  :.::|||.::||||.||||...
Zfish   346 EGILRVPGSAVRVKQLRQELDLHFY------DDRFDWDQVHQNDAAALLKMFIRELPYPLLTKLN 404

  Fly   461 IQLFYQCHTLPSID-QMNALSILCHLLPPENRNTLRSLLSFFNIIINLKDINKMNVHNVATIMAP 524
            :..|.....:.|.. |:.||.:|..:||..||:||::||.|...::..::.|:|||.||:.|:||
Zfish   405 MPAFTALQRISSPKYQIQALHLLIMILPEPNRDTLKALLEFLRKVVACEEKNRMNVWNVSMIVAP 469

  Fly   525 SMFPPRYIHPSDNNSIAEQVRMAAQCCRLTNILILRGEKLFQVPNNLIVESQK---TMMGKKGWH 586
            ::|  .||   ..|:..|:|:.|....::...||...:.|:.||..||.:.:|   ..|.||...
Zfish   470 NLF--TYI---GKNAKQEEVKSALAAAQIVCTLISHQDLLWTVPCFLINQVRKMNDAAMAKKSLS 529

  Fly   587 RHRNSNEITAK 597
            ..|:...:.::
Zfish   530 SERSKRGLLSR 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 76/222 (34%)
arhgap28NP_001007436.1 RhoGAP_ARHGAP18 306..516 CDD:239856 76/222 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 106 1.000 Domainoid score I6505
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D309300at33208
OrthoFinder 1 1.000 - - FOG0002326
OrthoInspector 1 1.000 - - otm25056
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14963
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
77.020

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