DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and arhgap12b

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_021335715.1 Gene:arhgap12b / 393848 ZFINID:ZDB-GENE-040426-1727 Length:882 Species:Danio rerio


Alignment Length:625 Identity:131/625 - (20%)
Similarity:231/625 - (36%) Gaps:176/625 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SEFLNEYYLQSNSQSIEPEASYEDGEMEAEWLVSAGYPELTK-----------PFEQGLEVSKKD 69
            ||:.||.:::...:...|.....||. .:||       ||.|           |....||  :|.
Zfish   357 SEYTNEKWIKHVDEQGRPYYYSADGS-RSEW-------ELPKYNLSPPISGEAPKSHSLE--RKQ 411

  Fly    70 LEPILTTLSKPHAEAIVQLVRTLNKTVRVRTK--------------SRPKRKPDIRDVFREFDEQ 120
            .|||:.|..: |:..::.:  :..::|..:..              |.|..|..:.:|.:..:..
Zfish   412 QEPIVLTKWR-HSTYVLDI--SDKESVNAKPNSPESDSCPSSPKHPSTPSEKCGVLNVTKITEHG 473

  Fly   121 GTVTRSRSATPDSLDSLQI--------DEAWT---NNSLPTFVNVYEKNTETAIQCVEQSNEIYL 174
            ..|.::.::|...|....:        ..:|:   |.|.|..:                   :.|
Zfish   474 KKVRKNWASTWTVLQGSSLLFAKGQGSGTSWSYCHNGSFPELL-------------------LSL 519

  Fly   175 KQNLRRT-PSAPPKSGTY-----ADIFRGSQVRCDIPLYSADGVELLGYSRIGTIQFPRNRSVSD 233
            ..|.:|: ...|..|.|:     |..|.|:|.:   |.::.|       .|.|::::        
Zfish   520 LSNWKRSIKPRPAVSYTHCRRARASSFGGNQSK---PEFTVD-------LRGGSVEW-------- 566

  Fly   234 PFCSIGRSKESRSENDARSQKKK-SSEVLSASE-----NECGRLLPMPYNVLSFES---ICRDSS 289
                  .|||..|:......|.: .:|:|..||     |:..|.|....|..::||   |..|..
Zfish   567 ------ASKEKSSKKHVIELKTRVGTELLIQSEIDSVINDWFRALSETINTHAWESDEAIEEDMP 625

  Fly   290 SLDSCEVLDTCDIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDK---RKPFKRRRK 351
            .....|..|....|.....:.| :..:.|:..:.          .:.:|.|.|   |:|..:..:
Zfish   626 ESPGSEKHDKEKDPRDSKKNRV-VKNSSMESSEQ----------KKTRVKLKKFLTRRPTLQAVR 679

  Fly   352 EEG----NLFGVSINALIRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGLLRIGGHK---QK 409
            ::|    .:||.|:.||.:|:    ||.   ||.|::..|..:...|...:||.|:.|:.   ||
Zfish   680 DKGYIKDQVFGCSLTALCQRE----GTS---VPNFVKMCIEHVENTGLNVDGLYRVSGNLAVIQK 737

  Fly   410 TELLYNELESTFYQNPDNLDNLFRTATVHELSSLLKRWLRELPQPLLT----NELIQLF----YQ 466
            .....|..|..      |||: .:...:|..:..||...||||:||.|    |:.::..    |:
Zfish   738 LRFAVNHDEKV------NLDD-SKWEDIHVTTGALKMLFRELPEPLFTYASFNDFVEAIKNSDYK 795

  Fly   467 CHTLPSIDQMNALSILCHLLPPENRNTLRSLLSFFNIIINLKDINKMNVHNVATIMAPSMFPPRY 531
                   .::.::..|...||..|:.|::.|......:|:..::|:|...:||.:..|::..|..
Zfish   796 -------QRVQSIKDLIKQLPKPNQETMKVLFKHLKRVIDHGEVNRMTTQSVAIVFGPTLLRPEI 853

  Fly   532 ------IHPSDNNSIAEQVRMAAQCCRLTNILILRGEKLF 565
                  :|....|.|.|             :::|..|.:|
Zfish   854 ETGNMAVHMVYQNQIVE-------------LILLEYENIF 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 56/227 (25%)
arhgap12bXP_021335715.1 SH3_ARHGAP12 17..76 CDD:213003
SH3-WW_linker 73..267 CDD:318759
WW 271..297 CDD:306827
WW 364..389 CDD:306827 6/32 (19%)
PH_ARHGAP9-like 459..611 CDD:270053 35/194 (18%)
RhoGAP_ARHGAP27_15_12_9 689..875 CDD:239868 53/219 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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