DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and Arhgap40

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_008760659.2 Gene:Arhgap40 / 296323 RGDID:1562428 Length:92 Species:Rattus norvegicus


Alignment Length:82 Identity:19/82 - (23%)
Similarity:33/82 - (40%) Gaps:23/82 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 FSEFLNEYYLQSNSQSIEPEASYEDGEMEAEWLVSAGYPELTKP-----FEQGLEVSKKDLEPIL 74
            |:|.||            |.:..|:|...:..|:|....:  ||     :|.|..:.:..|:|..
  Rat    21 FTEHLN------------PGSQPEEGSETSNSLLSDNTKK--KPATFLVYEVGGNIGEHRLDPDA 71

  Fly    75 TTL----SKPHAEAIVQ 87
            ..|    :.||.|.:::
  Rat    72 YLLDLYRANPHGEWVIR 88

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856
Arhgap40XP_008760659.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342454
Domainoid 1 1.000 109 1.000 Domainoid score I6215
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 186 1.000 Inparanoid score I3829
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D309300at33208
OrthoFinder 1 1.000 - - FOG0002326
OrthoInspector 1 1.000 - - otm46373
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14963
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.000

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