DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and Arhgap18

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001164046.1 Gene:Arhgap18 / 293947 RGDID:1305053 Length:665 Species:Rattus norvegicus


Alignment Length:682 Identity:173/682 - (25%)
Similarity:280/682 - (41%) Gaps:199/682 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QSNSQSI---EPEASYEDGEMEAEWLVSAGYPELTKPFEQGLEVSKKDLEPILTTLSKPHAEAIV 86
            |...::|   ||    ::||:|.|||..||   |:..|.:..:.|::.: ..|:||::..|.|:.
  Rat    92 QEGQEAIVVKEP----DEGELEEEWLKEAG---LSNLFGESADDSQESI-VFLSTLTRTQAAAVQ 148

  Fly    87 QLVRTLNKTVRVRTKSRPKRKPDIRDVFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPTF 151
            :.|.|:::|  :|.||:....||:||:|         .:.|.|...|.|...:....||      
  Rat   149 KRVETVSQT--LRKKSKQYHIPDVRDIF---------AQQREAQEKSPDDSDLRSVRTN------ 196

  Fly   152 VNVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSGTYADIFRGSQVRCDIPLYSADGVELLG 216
                 :|.:........|..:..|:.:.|.|...|.|.|            ||.|          
  Rat   197 -----ENEDQGKDDQPSSGAVDNKEPIPRVPEDIPASET------------DINL---------- 234

  Fly   217 YSRIGTIQFPRNRSVSDPFCSIGRSKESRSENDA-----RSQKKKSSEVLSASENECGRLLPMPY 276
                 .:.| ..::|:....|..|.:::|. |||     |..|.|:      .....|.|.|.  
  Rat   235 -----EVSF-AEQAVNQKELSKERMQKTRG-NDASLPSFRLPKDKT------GTTRIGDLAPQ-- 284

  Fly   277 NVLSFESICRDSSSLDSCEVLDTCDIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLD 341
                                                    |||::..:..:||..::|...|.|.
  Rat   285 ----------------------------------------DMKKVCYLSLIELTALYDVLGVELK 309

  Fly   342 KRKPFKRRRKEEGNLFGVSINALIRRDQ-QVTGTDSSLVPLFLEKLIGELLRRGSRE-EGLLRIG 404
            ::|..|.:.::.| |||:.:..|:.:|| :|.||   .:||..:||| ..:..||.| ||||||.
  Rat   310 QQKAVKIKTRDSG-LFGIPLTILLEQDQRKVPGT---RIPLIFQKLI-SCIEEGSLETEGLLRIP 369

  Fly   405 GHKQKTELLYNELESTFYQNPDNLDNLFRTATVHELSSLLKRWLRELPQPLLTNELIQLFYQCHT 469
            |...:.:.|..|||:.||:...|.:::.:    |:.:||||.:|||||||||:.|.::.|.....
  Rat   370 GAAMRVKNLCQELEAKFYEGTFNWESVKQ----HDAASLLKLFLRELPQPLLSTEYLKAFQAVQN 430

  Fly   470 LPS-IDQMNALSILCHLLPPENRNTLRSLLSFFNIIINLKDINKMNVHNVATIMAPSMFPPRYIH 533
            ||: .:|:.||::|..|||..||:||::||.|...:|:.|:.|||...|||.:|||::|   ..|
  Rat   431 LPTKKEQLQALNLLVILLPDANRDTLKALLEFLQRVIDNKEKNKMTAVNVAMVMAPNLF---MCH 492

  Fly   534 PSD-NNSIAEQVRMAAQCCRLTNILILRGEKLFQVPNNLIVE--------------SQKTMMGKK 583
            ... .:|...:..|||......::||...:.|:.:|..::.:              :.|.::.|.
  Rat   493 ALGLKSSEHREFEMAAGTANTMHLLIRYQKLLWTIPKFIVNQVRKHNTAHQKKERRAMKKLLKKM 557

  Fly   584 GWHRHRNSNEITAK-----PSG----------------------KASNV---------------- 605
            .:.|.::..:..|.     |.|                      |||:|                
  Rat   558 AYDREKHEKQDRAANGADVPQGVIRVQAPHLSKVSMAIQLTEELKASDVLARFLSQESGVAQTLK 622

  Fly   606 -----------GVGHDSTVINKYSTNLKHLHP 626
                       .:|......:.|..:|.||:|
  Rat   623 KGEVFLYEIGGNIGERCLDDDTYMKDLYHLNP 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 84/237 (35%)
Arhgap18NP_001164046.1 RhoGAP_ARHGAP18 323..536 CDD:239856 84/223 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342453
Domainoid 1 1.000 109 1.000 Domainoid score I6215
eggNOG 1 0.900 - - E1_KOG2200
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 186 1.000 Inparanoid score I3829
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D309300at33208
OrthoFinder 1 1.000 - - FOG0002326
OrthoInspector 1 1.000 - - otm46373
orthoMCL 1 0.900 - - OOG6_108161
Panther 1 1.100 - - O PTHR14963
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.760

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