DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and rga1

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_596743.1 Gene:rga1 / 2541022 PomBaseID:SPBC3F6.05 Length:1150 Species:Schizosaccharomyces pombe


Alignment Length:674 Identity:154/674 - (22%)
Similarity:260/674 - (38%) Gaps:146/674 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 HHSDDQDFSEFLN-----EYYL----QSNSQSIEPEASYEDGEMEAEWLVSAGYPELTKPFEQGL 63
            ::.::.|::.:.|     |.||    .||..:.||..|:|             |......:...|
pombe   517 NNRENYDWARWNNQTKQIECYLCYTESSNVSNDEPHPSFE-------------YVSRLSQYIYLL 568

  Fly    64 EVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPDIRDVFREFDEQGTVTRSRS 128
            .:                  |:|:|.     |:.:......:|||...|..:|.......|..::
pombe   569 RI------------------ALVRLY-----TILMENNDSSQRKPLSVDPKQENVSSTVETAKQA 610

  Fly   129 ATPDSLDSLQIDEAWTNNSLPTFVNV-YEKNTETAIQCVEQSNEI-YLKQNLRRTPSAPPKSGTY 191
            .|..|.||.: ..|.|.|.|....:. ..|.|....|....|.|. .|.:|:  :.|...||   
pombe   611 ETTASSDSFR-KYANTLNDLRHLKSSRNRKATSNETQSSSNSTETSKLSKNV--SESGKDKS--- 669

  Fly   192 ADIFRGSQVRCDIPLYSADGVELLGYSRIGTIQFPRNRSVSDPF--------------CSIGRSK 242
                         |.:.:.|..:.|.|.:.....|..|.: |.|              .|..|::
pombe   670 -------------PHWHSHGGSITGKSIVEQASSPLERRM-DAFDENRAFTLDDIPKVISEQRNR 720

  Fly   243 ESR--------SENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDT 299
            |.|        |..|. |.:|.|..:...::.....|.|.     |.::..|..|.|.:.|:|.|
pombe   721 EHRPNAFRHMPSYTDP-SYRKNSGAIYDKNDGTQKGLTPK-----SEDAPIRYLSDLSNLELLFT 779

  Fly   300 CDIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKR--KPFKRRRKEEGNL-----F 357
            ..:...:...:|    .|...|.     ||..:.|..|....::  |.||.:..|:.|:     |
pombe   780 KHVAVLILHPLV----RDYYSLD-----ELMEMSDLRKGGFWEKFGKAFKGKDAEKKNVKKKGTF 835

  Fly   358 GVSINALIRRD--QQVTGTDSSL--VPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELE 418
            ||.:..|:.|:  |...||...:  :|.|:...:..:.|:.....|:.|..|:.::.:    ||.
pombe   836 GVPLEILVERNNAQSTVGTGVGVKHIPAFIGNTLAAMKRKDMSVVGVFRKNGNIRRLK----ELS 896

  Fly   419 STFYQNPDNLDNLFRTATVHELSSLLKRWLRELPQPLLTNELIQLFYQCHTLPSIDQ-MNALSIL 482
            .....:||::|  :...|..:|::|||::|||||.||||.:|..||.....|.|.:: |..|.:.
pombe   897 DMLDVSPDSID--YEQETPIQLAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMRVLHLT 959

  Fly   483 CHLLPPENRNTLRSLLSFFNIIINLKDI-----NKMNVHNVATIMAPSMFPPRYIHPSDNNSIAE 542
            ..|||..:|:|:..:..|...:.:...|     :||::||:||::.|::...:...|.|.:.:|.
pombe   960 ICLLPKGHRDTMEVIFGFLYWVASFSHIDDEVGSKMDIHNLATVITPNILYSKSNDPVDESFLAI 1024

  Fly   543 QVRMAAQCCRLTNILILRGEKLFQVPN--NLIVESQKTMMGKKGW---HRHRNSNEITAKPSGKA 602
            :.         .::||...||..:||.  :|:::..........|   ..::...||.::.|...
pombe  1025 EA---------VHLLIENFEKFCEVPREISLLLDDPTLFYNNAAWTSKELYKRCEEIISQMSLDE 1080

  Fly   603 SNVGVGHDST-----VINKYSTNL 621
            .|......||     .|.:.:|||
pombe  1081 RNTPKHTASTKRKRQPIRRVTTNL 1104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 64/236 (27%)
rga1NP_596743.1 LIM1_Lrg1p_like 116..172 CDD:188777
LIM2_Lrg1p_like 180..232 CDD:188778
LIM 485..539 CDD:295319 4/21 (19%)
RhoGAP_fLRG1 835..1044 CDD:239862 63/223 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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