DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conu and Arhgap39

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_006520857.1 Gene:Arhgap39 / 223666 MGIID:107858 Length:1109 Species:Mus musculus


Alignment Length:590 Identity:127/590 - (21%)
Similarity:204/590 - (34%) Gaps:193/590 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DDQDFSEFLNE--YYLQSNSQSIEPE------------ASYEDGEMEAEWLVSAG--YPELT--K 57
            |...|.:.|.|  ..:|:|..|.||.            |.:|........:.|:.  :|..|  |
Mouse   618 DKLGFPQILLEKSVSVQTNLASPEPHLHPSQSEDLGACAQFESSRQNRSAMPSSSCVFPTFTLRK 682

  Fly    58 PFEQGLEVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPDI----RDVFREFD 118
            |      .|:.|:|...:.....|.:.:.:  |.::....:...|...:||.|    |.|.:|..
Mouse   683 P------SSETDIENWASKHFNKHTQGLFR--RKVSIANMLAWSSESIKKPMIVTSDRHVKKEAC 739

  Fly   119 EQGTVTR----SRSATPDSLD-SLQI-DEAWTNNSLPTFVNVYEKNTETAIQCVEQSNEIYLKQN 177
            |...:.:    .|.|..|.|. :|:| .:.|:...|         ..|..||...|:.|.:..::
Mouse   740 EIFKLIQMYMGDRRAKADPLHVALEIATKGWSAQGL---------RDELYIQLCRQTTENFRLES 795

  Fly   178 LRR------------TPSAPPKSGTYAD--IFRGSQVRCDIPLYSADGVELLGYSRIGTIQFPRN 228
            |.|            .|:  ||..:|.:  |:|.                               
Mouse   796 LARGWELMAICLAFFPPT--PKFHSYLEGYIYRH------------------------------- 827

  Fly   229 RSVSDPFCSIGRSKESR--SENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSL 291
               .||   :..:|.::  .|...|:.||||..          |..|.||               
Mouse   828 ---MDP---VNDTKVTQHIKELLERNSKKKSKL----------RKKPKPY--------------- 861

  Fly   292 DSCEVLDTCDIPSTLFTDVVLISETDMKRLQTIL-----WLELATIFDRNKVSLDKRKPFKRRRK 351
                                 :.|.|...:.|..     .|:.|.:       ...:|..|:...
Mouse   862 ---------------------VEEPDGVAISTYAKYCYHKLQKAAL-------TGAKKGLKKPNV 898

  Fly   352 EE----------GNLFGVSINALIRRDQQVTGTDSSLVPLFLEKLIGELLR-RGSREEGLLRIGG 405
            ||          .::||.::..::.. |:....|..| |....:|..|:|. .|.:.||:.|:.|
Mouse   899 EEIRHAKNAVFSPSMFGSALQEVMSM-QKERYPDRQL-PWVQTRLSEEVLALNGDQTEGIFRVPG 961

  Fly   406 HKQKTELLYNELESTFYQNPDNLDNLFRTATVHELSSLLKRWLRELPQPLLTNELIQLFY-QCHT 469
            ...:...|  :|:...::.|..|::      .|..:||||.|.|||.:||:.:|    || ||  
Mouse   962 DIDEVNAL--KLQVDQWKVPTGLED------PHVPASLLKLWYRELEEPLIPHE----FYEQC-- 1012

  Fly   470 LPSIDQMNALSILCHLLPPENRNTLRSLLSFFNIIINLKD--INKMNVHNVATIMAPSMF----- 527
            :...:...|...:.|.||..||..|..|:.|..:.:...:  |.||:|.|:|.:|||:..     
Mouse  1013 IAHYESPEAAVAVVHALPRINRMVLCYLIRFLQVFVQPANVAITKMDVSNLAMVMAPNCLRCQSD 1077

  Fly   528 PPRYI 532
            .||.|
Mouse  1078 DPRVI 1082

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 55/186 (30%)
Arhgap39XP_006520857.1 MyTH4 762..903 CDD:395633 39/241 (16%)
RhoGAP_KIAA1688 914..1099 CDD:239854 55/185 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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