DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and F23H11.4

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_497289.1 Gene:F23H11.4 / 175253 WormBaseID:WBGene00017760 Length:1003 Species:Caenorhabditis elegans


Alignment Length:675 Identity:123/675 - (18%)
Similarity:220/675 - (32%) Gaps:226/675 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SNTDLHHSDDQDFSEFLNEYYLQ----------SNSQSIEPEASYEDGEMEAEWLV--------S 49
            |:|:.:.:.:....|  |..||.          :.|.|..|..|.:..|:. |||.        |
 Worm   133 SSTNCYENHNSSVVE--NPLYLSLDTYRSISGITPSPSNAPTTSPDCDELR-EWLTEEEENESCS 194

  Fly    50 AGYPE-----LTKPFEQGLEVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPD 109
            :..||     :..|      :...|..|.:.:...|:...                   |:|.  
 Worm   195 SSRPENLNASIPAP------IPGDDSRPSIDSEENPYTPC-------------------PRRS-- 232

  Fly   110 IRDVFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNS------LPTFVNVYEKNTETAIQCVEQ 168
                  ::|....:    .:|.|..|.....:..||||      .|.||.  ||   |..:|...
 Worm   233 ------DYDNSEFI----GSTIDPFDDSFYTDNTTNNSHQNLYVSPQFVK--EK---TKSECDRY 282

  Fly   169 SNEIYLKQNLRRTPSAPPK-----------------SGTYADIFRGSQVRCDIPLYSADGVELLG 216
            .|.:    .:..:|..||.                 |....|:||      |......||..:  
 Worm   283 ENVV----EICSSPDPPPTHLYVNVPPIYPSADNIISSESDDVFR------DEGKMKIDGSSI-- 335

  Fly   217 YSRIGTIQFPRNRSVSDPFCSIGRSKES-RSENDARSQKKKSSEVLS-------ASENECGRLLP 273
             :.:|.:....::......|.:...:.| ..:.|:......:.::..       ||:.       
 Worm   336 -TFVGFVSLTSSKKEKRLHCRLRNMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDT------- 392

  Fly   274 MPY---------NVLSF------------------------ESICRDSSSLDSCEVL-------- 297
             ||         ||:||                        .|:.||:..|..|.:.        
 Worm   393 -PYILIHVGEKRNVISFIPEDPPNLWMFFLSEAWLSLNYGLTSVLRDADELTICGITWIKHGTTG 456

  Fly   298 --DTCDIP-STLFTDVVLISETD----------------MKRLQTILWLELATIFDRNKV----- 338
              ..|... :.|....:|:...|                |..:.:|:..||..: |..||     
 Worm   457 EWKICSAGINGLTLHYMLVDAKDRIYNRNSERSDAGTSFMSTVGSIIGDELVEV-DLRKVMTMRE 520

  Fly   339 SLDKRKPFKRRRKEEG----NLFGV-----------------SINALIRR------DQQVTGTDS 376
            .:||.:.....|.:.|    .|.||                 :|.||::|      :.::||.: 
 Worm   521 RIDKSEFCPNARHKRGPFSITLHGVTLYIDSRDDSTTSHWYEAIEALLKRPATRLENLRLTGDN- 584

  Fly   377 SLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELEST---FYQNPDNLDNLFRTATVH 438
              :|:.::|.|..:...|.:.||:.|..|...:.:.:..:|...   :|...:|      ..||:
 Worm   585 --IPVIVDKCIRFVSAYGMKCEGIYRRNGKVTEAKTILTKLTEDPVGYYPVHEN------DETVY 641

  Fly   439 ELSSLLKRWLRELPQPLLTNELIQLFYQCHTLPSIDQMNA-LSILCHLLPPENRNTLRSLLSFFN 502
            .::.:|:::.|:|..||..:......:...|....|::.| .:.|.:.....:|:||:.|:....
 Worm   642 AVADVLRQFFRKLDAPLFPSSSQADLFDLATESQSDELCARYAQLINTFELVHRSTLKKLIGHLK 706

  Fly   503 IIINLKDINKMNVHNVATIMAPSMF 527
            .:......|:.:|.|:|.:.|.|:|
 Worm   707 NVSEHAQENRASVENLAKVFAASLF 731

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 42/199 (21%)
F23H11.4NP_497289.1 RhoGAP_ARAP 571..759 CDD:239850 35/170 (21%)
RA_ARAPs 790..882 CDD:340633
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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