DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and Arhgap4

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_011245832.1 Gene:Arhgap4 / 171207 MGIID:2159577 Length:965 Species:Mus musculus


Alignment Length:580 Identity:122/580 - (21%)
Similarity:196/580 - (33%) Gaps:162/580 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 QGLEVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPDIRDVFREFDEQGTVTR 125
            |||    ..||..|..|..|..:|.|..|..:.....:|.:.:|....::.:|..|.:....:..
Mouse   315 QGL----GSLEEALEALDPPGDKAKVLEVHAMAFCPPLRFEYQPHEDDEVAEVLIEMELWDEILP 375

  Fly   126 SRSATPDSLDSLQIDEAWTNNSLPTFVNVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSGT 190
            ........||...|:....|.:|        |.|..|:.....|.:..:..:|:.:||......|
Mouse   376 RAQNIQSRLDQKTIETEEVNKTL--------KATLKALLEAVASEDGDILDSLQASPSTESLKST 432

  Fly   191 YADIFRGSQVRCDIPLYSADGVELLGYSRIGTIQFPRNRSVS-----------DPFCSIGRSKES 244
            .:|           |               ||.|..|.|:..           ..:.| |||..|
Mouse   433 SSD-----------P---------------GTRQTGRRRNQQQETETFYITKLQEYLS-GRSILS 470

  Fly   245 RSENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDTCDIPSTLFTD 309
            :    .:::.:|..|.:.....|                  :..:|...|               
Mouse   471 K----LQAKHEKLQEAIQQGNKE------------------KQETSRTQC--------------- 498

  Fly   310 VVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRRKEEGNLFGVSINALIRRDQQVTGT 374
                  |:.|                    ..|..|...|.:....|||..:...|:...|.   
Mouse   499 ------TERK--------------------FHKSHPPHPRFQYNQRLFGGDLEKFIQSSGQP--- 534

  Fly   375 DSSLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELESTFYQNPDNLDNLFRTATVHE 439
                |||.:|..|..:...|.:.||:.|:.|.:.:    .:|:...|.:..|.|:   :..|||:
Mouse   535 ----VPLVVESCIRFINLNGLQHEGIFRVSGAQAR----ISEIRDAFERGEDPLE---KGCTVHD 588

  Fly   440 LSS---LLKRWLRELPQPLLTNELIQLFYQCHTLPSI-DQMNALSILCHLLPPENRNTLRSLLSF 500
            |.|   :||.:.|.|..||...::.........|..: :::..:|.|...||......||.|.:|
Mouse   589 LDSVAGVLKLYFRSLEPPLFPLDMFNELLASAELEVVGERVEPVSHLLFKLPRPVLVVLRYLFTF 653

  Fly   501 FNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQVRMAAQCCRLTNILILRGEKLF 565
            .|.:....|.|.|:.:|:|....|::.|.    |:..:.:|.|.|:.    :|...|||:..::|
Mouse   654 LNHLAQYSDENMMDSYNLAVCFGPTLLPV----PAGQDPVALQGRVN----QLVQTLILQPARIF 710

  Fly   566 QVPNNL---IVESQKTMMGKKGWHRHRNSNEITAKPSGKASNVGVGHDSTVINKYSTNLK 622
            ..|..|   |.|  |.|                |.||  ||.:|.|...::|.:....||
Mouse   711 PPPAMLPGPIYE--KCM----------------APPS--ASCLGDGQLESLIGEPELELK 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 60/226 (27%)
Arhgap4XP_011245832.1 F-BAR_srGAP 30..296 CDD:153340
RhoGAP 518..705 CDD:383032 54/208 (26%)
SH3 769..823 CDD:388381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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