DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conu and sh3bp1

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_031756949.1 Gene:sh3bp1 / 101733422 XenbaseID:XB-GENE-984798 Length:636 Species:Xenopus tropicalis


Alignment Length:675 Identity:133/675 - (19%)
Similarity:234/675 - (34%) Gaps:226/675 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QDFSEFLNEYYLQSNSQSIEPEASYEDGEMEAEWLVSAGYPELTKPFEQGLEVSKKDLEPILTTL 77
            ||.::.|.|..|.:: |.:||....  ..:..:.|||.    |..|  .|.:..||..:..|::|
 Frog    21 QDVTDILTEDLLLAD-QQVEPVKKL--AHLVGKRLVSC----LQAP--AGSDREKKLKKLALSSL 76

  Fly    78 SKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPDI--------------------RDVFREF----- 117
            |...||.:.:          :.::||.:|..::                    |||.:..     
 Frog    77 SWTMAECLKE----------IDSESRMRRTVEMGCCVEGILSQDLADFEISLERDVLQPLAKLSE 131

  Fly   118 DEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPTFVNVYEKN---------TETAIQ---CVEQSN 170
            ::..|:.:.|.    .|..|..|  |  |:..:.::..:||         |.||.:   ..|:.:
 Frog   132 EDLPTILKHRK----QLQKLITD--W--NTAKSRLSQIQKNINAGQGGGSTGTAAKLESLKEEED 188

  Fly   171 EIYLKQNLRRTPSAPPKSGTYADIFRGSQVRCDIPLYSADGVELLG-YSRIGTIQFPRNRSVSDP 234
            |  |::.|.::     |....||::..:....:...|....:||.. |.:         :|:|..
 Frog   189 E--LRRKLEQS-----KDEYIADLYNYTTKEKECERYFIQLLELQAEYHK---------KSLSHL 237

  Fly   235 FCSIGRSKESRSENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDT 299
            ..::...|:.:.|....|.::.|:||..         :|:..::..||           ||:   
 Frog   238 TDALEELKDLQKETVQDSIEQASAEVYG---------VPLETHLAKFE-----------CEI--- 279

  Fly   300 CDIPSTLFTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRRKEEGNLFGVSINAL 364
                                                                      .|.|:|.
 Frog   280 ----------------------------------------------------------AVPISAC 286

  Fly   365 IRRDQQVTGTDSSLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELESTFYQNPDNLD 429
            :|.                      ||.:|.:||||.|:.....    :..:|::.......:|.
 Frog   287 VRM----------------------LLAQGMQEEGLFRLAAGAS----VLKKLKACLRAGASDLS 325

  Fly   430 NLFRTATVHELSSLLKRWLRELPQPLLTNELIQLFYQC-HTLPSIDQMNALSILCHLLPPENRNT 493
            |..  :..|.::..||.:|||||:||:|.||...:..| .|.....::......|..||..|.|.
 Frog   326 NFM--SEPHAVAGALKSYLRELPEPLMTYELFDDWMTCASTKDPEKRLECYRDACKKLPAANYNN 388

  Fly   494 LRSLLSFFNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQVRMAAQCCRLTNILI 558
            ||.|:.|...:...:::|||...|:|.::.|::...:    ||..:....:..|:..     |::
 Frog   389 LRYLIKFMAKLAEHQEVNKMTPSNIAIVLGPNLLWAK----SDGETSLLDMASASPI-----IVV 444

  Fly   559 LRGEKLFQVPNNLIVESQKTMMGKKGWHRHRNSNEITAKPSG-------KA-------SNVGVGH 609
            ...|.|.....|:..|.....:.:.   .|..|:.:.|:.||       ||       |||....
 Frog   445 SVVEGLLNCAANIFPEDVDFGVSEA---YHETSSVLPAQCSGIKNQEWPKAEETALPPSNVSENT 506

  Fly   610 DST--------VINKYSTNLKHLHP 626
            :|.        .:.|:||: |.|.|
 Frog   507 ESVSESLTEWEELIKFSTS-KALPP 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 53/220 (24%)
sh3bp1XP_031756949.1 BAR 16..250 CDD:416402 53/271 (20%)
RhoGAP 263..462 CDD:413382 59/316 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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