DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and arhgap39

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_031759882.1 Gene:arhgap39 / 101732569 XenbaseID:XB-GENE-6049004 Length:980 Species:Xenopus tropicalis


Alignment Length:614 Identity:114/614 - (18%)
Similarity:198/614 - (32%) Gaps:212/614 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 TKSRPKRKPDI--------------RDVFRE---FDEQGTV---------TRSRSATPDSLDSLQ 138
            |:.|..|||.:              |:...|   .||:.:.         |.|||:..|...|  
 Frog   450 TRKRKSRKPSLSLEPNTVPCEASGERETHNEPSGADERPSSMPNRPLMCRTESRSSEADMCRS-- 512

  Fly   139 IDEAWTNNSLPTFVNVYEKNTETAIQCVEQSNEIYLKQNLRRTPSAPPKSGTYADIFRGSQVRCD 203
                    |..||:      ....:....|....::||   |:.....|.|:             
 Frog   513 --------SPETFL------AHARLAWEAQQAHFHMKQ---RSSWDSQKDGS------------- 547

  Fly   204 IPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIGRSKESRSENDARSQKKKSSEVLSASENEC 268
                        ||...|.:..|    :..|........|:.::.|::..|:.:.|.|...:...
 Frog   548 ------------GYESDGAVPLP----MPGPVVRAFSEDEALAQQDSKHWKRSTFEKLGFPQILL 596

  Fly   269 GRLLPMPYNVLSFESICRDSSS--LDSCEVLD------------TCDIPSTLFTDVVLISETDMK 319
            .:.:.:..|:.|.|.....|.|  |.:|...:            :|..|:  ||.....||||::
 Frog   597 EKSVSVQTNLASPEPFLHPSQSEDLGACAQFENSRHMRNMMPSSSCVFPT--FTLRKPSSETDIE 659

  Fly   320 RLQTILWLELATIFDRNKVSLDK---------RKPF-----KRRRKEEGNLFGVSINALIRRDQQ 370
            ...:..:.:......|.|||:..         :||.     :..:||...:|  .:..:...|::
 Frog   660 NWASKHFNKHTQGLFRRKVSIANMLSWSSESIKKPMIMTSDRNVKKEACEIF--KLIQMYMGDRR 722

  Fly   371 VTGTDSSLVPLFLEKLIGELLRRGSREEGL---LRIGGHKQKTE--------------------- 411
            .. :|...|.|       |:..:|...:||   |.|...:|.||                     
 Frog   723 AK-SDQLSVAL-------EIATKGWSMQGLRDELYIQLCRQTTENFRYESLALGWELMTICLAFF 779

  Fly   412 ----LLYNELESTFYQNPDNLDNLFRTATVHELSSLLKRWLRELPQPLLTNELIQLFYQCHTLPS 472
                ..::.||...|::.|.:::   |.....:..||:|..::..|   ..:..:.:.:.|...:
 Frog   780 PPTPKFHSYLEGYIYRHMDPVND---TKVTRHIKELLERNNKKKSQ---VRKRAKSYIEEHDGVA 838

  Fly   473 IDQMNALSILCHLLPPENRNTLRSLLSFFNIIINLKDINKMNVHNVA----TIMAPSMF------ 527
            |   :..:..|:      |...|:.|....     |.:||.|:..:.    .:.:||||      
 Frog   839 I---STYAKYCY------RKLQRAALMGAK-----KGLNKPNMEEIRHARNAVFSPSMFSSTLQE 889

  Fly   528 ---------PPRYIHPSDNNSIAEQVRMAAQCCRLTNILILRG---EKLFQVPNN--------LI 572
                     |.|.: |.....::|:|            |.|.|   |.:|:||.:        |.
 Frog   890 IMSMQKDKYPDRQL-PWVQTRLSEEV------------LALNGDQTEGIFRVPGDIDEVNALKLQ 941

  Fly   573 VESQKTMMGKKGWHRHRNSNEITAKPSGK 601
            |:..|...|.:..|       :..|..||
 Frog   942 VDQWKIPTGLEDPH-------VPGKKQGK 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 51/277 (18%)
arhgap39XP_031759882.1 PRP40 4..>72 CDD:227435
WW 46..72 CDD:395320
MyTH4 731..872 CDD:395633 29/167 (17%)
RhoGAP 883..>957 CDD:413382 18/93 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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