DRSC/TRiP Functional Genomics Resources

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Protein Alignment conu and arhgap28

DIOPT Version :9

Sequence 1:NP_001036454.1 Gene:conu / 3355133 FlyBaseID:FBgn0039994 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_002938100.2 Gene:arhgap28 / 100488165 XenbaseID:XB-GENE-1013085 Length:661 Species:Xenopus tropicalis


Alignment Length:607 Identity:152/607 - (25%)
Similarity:253/607 - (41%) Gaps:158/607 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNSNTDLHH-------SDDQDFSEFLNEYYLQSNSQSIEPEASYED-----------GEMEAEWL 47
            |.||..||.       |:....:..:.:::.:.|:.....|...:|           |::|||||
 Frog    52 MLSNESLHTPQFNRSISESSMDNSSMEDFWCEVNNIKESSEDGQDDSLLMEVKPADEGDLEAEWL 116

  Fly    48 VSAGYPELTKPFEQGLEVSKKDLEPILTTLSKPHAEAIVQLVRTLNKTVRVRTKSRPKRKPDIRD 112
            ..||...|....::      .|.:.:|:||::..|.|:.:...|..:|:|.:.|...:   |:||
 Frog   117 QDAGLSNLISGTQE------HDGQALLSTLTRTQAAAVQKRYTTYTQTMRKKNKHTVR---DVRD 172

  Fly   113 VFREFDEQGTVTRSRSATPDSLDSLQIDEAWTNNSLPTFVNVYEKNTETAIQCVEQSNEIYLKQN 177
            :|                            ..|:|.|:|    |..|.:.|    .||.:   |:
 Frog   173 IF----------------------------GINDSTPSF----EPKTLSPI----PSNGV---QH 198

  Fly   178 LRRTPSAPPKSGTYADIFRGSQVRCDIPLYSADGVELLGYSRIGTIQFPRNRSVSDPFCSIGRSK 242
            :.:.|...|.:..          .|.:...|....|.|.:          ..|.|:.....|:.|
 Frog   199 MIKKPIWKPVTNN----------SCTLEKPSPSVAEELSF----------EASFSETVAVDGKDK 243

  Fly   243 ESRSENDARSQKKKSSEVLSASENECGRLLPMPYNVLSFESICRDSSSLDSCEVLDTCDIPSTL- 306
            ||.     ::|:.|                             :|.|:|           |..: 
 Frog   244 ESE-----KNQRIK-----------------------------KDDSAL-----------PKFIV 263

  Fly   307 ------FTDVVLISETDMKRLQTILWLELATIFDRNKVSLDKRKPFKRRRKEEGNLFGVSINALI 365
                  .|:|..:|..|||:::.:..:||...:|...:.| ||....|.:.:|..||||.:..|:
 Frog   264 WKSRFGLTEVGDLSLEDMKKIRYLSLIELTAFYDALGIEL-KRNRIVRIKGKENGLFGVPLTTLL 327

  Fly   366 RRDQ-QVTGTDSSLVPLFLEKLIGELLRRGSREEGLLRIGGHKQKTELLYNELESTFYQNPDNLD 429
            ..|| :..||.   |||..:||:..|...|...||:||:.|...:.:.|..|||:.|:      |
 Frog   328 ESDQKKFPGTK---VPLIFQKLLQRLEETGLETEGILRVPGSAARVKNLREELEAKFH------D 383

  Fly   430 NLFRTATV--HELSSLLKRWLRELPQPLLTNELIQLFYQ-CHTLPSID-QMNALSILCHLLPPEN 490
            |.|....|  ::.:.|||.::||||.||.|.|.:..|.. ...:..|. |:.||.:|..|||..|
 Frog   384 NSFDWNKVRNNDAAGLLKMFIRELPSPLFTMEYLPAFITLVEKISKIKLQLQALHLLIMLLPDAN 448

  Fly   491 RNTLRSLLSFFNIIINLKDINKMNVHNVATIMAPSMFPPRYIHPSDNNSIAEQVRMAAQCCRLTN 555
            |:|.::||:|...:::.::.|||::.||:.|:||::|..:  ..|.|.   |:::.||....:..
 Frog   449 RDTAKALLNFLKKVVSNEEKNKMSLWNVSMILAPNLFICK--RKSTNK---EEMKAAASTAHIVR 508

  Fly   556 ILILRGEKLFQVPNNLIVESQK 577
            :||...:.|:.||:.||.:.:|
 Frog   509 LLIRYQDILWTVPSFLISQVRK 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
conuNP_001036454.1 RhoGAP_ARHGAP18 356..576 CDD:239856 77/224 (34%)
arhgap28XP_002938100.2 RhoGAP_ARHGAP18 318..529 CDD:239856 77/224 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D309300at33208
OrthoFinder 1 1.000 - - FOG0002326
OrthoInspector 1 1.000 - - otm49450
Panther 1 1.100 - - LDO PTHR14963
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.020

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