DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cta and gpa-13

DIOPT Version :9

Sequence 1:NP_001036421.1 Gene:cta / 3355131 FlyBaseID:FBgn0000384 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_001256451.1 Gene:gpa-13 / 179746 WormBaseID:WBGene00001675 Length:402 Species:Caenorhabditis elegans


Alignment Length:461 Identity:115/461 - (24%)
Similarity:201/461 - (43%) Gaps:88/461 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TQERIS---------IPNNNVITNGVENNIDSDTLSGTLTHLMEEHRTRVGAVTGPEAATTSTDG 65
            :|.::|         ||..:||  |.|.||:.           .||......|...|:.......
 Worm     7 SQSKVSDVPAACDKPIPEPDVI--GKEENIEP-----------IEHSAEKEVVEKKESTPVPPPS 58

  Fly    66 LISNGAERLRLQGSRLQTSRFACFRCCGNIITYLVRLRSTPEELEQRYKSKEIDKFLEKEKHTFR 130
            :    :.::.||...::.||               .:....::.|..|.                
 Worm    59 I----SPQVALQVPEIRASR---------------SITPASQKSEDPYS---------------- 88

  Fly   131 RQVKLLLLGAGESGKSTFLKQMRIIHGVNFDYELLLEYQSVIYQNVIRGMQVLLDAREKLNIAWG 195
             .::|||||:.||||:|.|:|:|:::..:|........::.||.|:.:.::.|..|....:|.:.
 Worm    89 -HIRLLLLGSAESGKTTVLEQVRLLYKQHFTESEYFHRRAFIYHNIFKSIKALCRAMRMSDIQFA 152

  Fly   196 SD---GREQDAYDAKLMECNSLDVPKFMEY-------APPISRLWQDRGIRRAFERRREFQISDS 250
            ..   ||.|           |:...:...|       |..|..:|.|:.:::.:.||.:|.::||
 Worm   153 DPINMGRAQ-----------SIIADEHGHYGLFSKDLAEKIKHIWNDKSMQKLYARRSQFNLNDS 206

  Fly   251 VSYFLDEIQRLATPDYVPTHKDILHCRKATKGVYEFCVKVQNIPFVFVDVGGQRTQRQKWTRCFD 315
            .||||:.|.::...||.|:.:|::.....|.||........|..|...|:|||:..|:||...::
 Worm   207 ASYFLNNIDKINMVDYKPSERDLIMAYVPTCGVQNVIFTACNQSFQLFDIGGQKIDRRKWALQYE 271

  Fly   316 SSVTSIIFLVSSSEFDQVLAEDRKTNRLEESKNIFDTIVNNATFKGISIILFLNKTDLLEQKVCN 380
             .:.:|.|.::.||:|||::||..||||:::.|:..:|..:..|....|.||||:.|:..:|:  
 Worm   272 -GIDAIFFCIAISEYDQVMSEDMVTNRLDDALNLLQSISEDPAFATTPIYLFLNEIDVFCEKL-- 333

  Fly   381 PETDIRWYYPHFNGNPHSVLDVQNFILQMFMSV--RRSSSISRIYHHFTTAIDTRNINVVFNSVK 443
            ....:..|.|.|.|....  |..:|:..:....  :|..|:.|:|.  ..||||:.:..:.::|.
 Worm   334 SVIPLSKYKPDFKGGDQD--DAIDFMENLACEALGKRDRSLYRVYR--CIAIDTQMMAELLSTVF 394

  Fly   444 DTILQR 449
            ..|.:|
 Worm   395 KDIAKR 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ctaNP_001036421.1 G_alpha 112..455 CDD:214595 96/350 (27%)
G-alpha 133..451 CDD:206639 95/329 (29%)
gpa-13NP_001256451.1 MRP-S32 <13..>54 CDD:287214 12/53 (23%)
G_alpha 70..397 CDD:214595 97/376 (26%)
G-alpha 90..401 CDD:206639 95/329 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54330
OrthoDB 1 1.010 - - D754573at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.930

Return to query results.
Submit another query.